Browse
Submit Data
Databases
API
Help

Dataset Information

18 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete mitochondrion genome of the endangered Mohave tui chub Siphateles bicolor mohavensis (Cypriniformes: Cyprinidae).

ABSTRACT: The Mohave tui chub (Siphateles bicolor mohavensis) is an endangered cyprinid fish endemic to the Mojave Desert region of southeastern California, USA. Here, we describe the complete 16,607 base pair (bp) mitochondrial genome of S. b. mohavensis. The mitogenome has a nucleotide base composition of A (29.08%), T (26.91%), G (17.58%), and C (26.43%), and encodes 13 protein subunits, 22 tRNAs, a 12S rRNA of 956 bp and 16S rRNA of 1691 bp, and a 929 bp D-loop control region, each located in the conserved mtDNA structure typical for cyprinid fishes. All protein-coding genes have initiation codons of ATG or GTG, and only the ND1, CO1, ATPase8, NDL4, ND4, ND5, and ND6 genes have complete stop codons. Phylogenetic analyses confirmed the relationship of S. b. mohavensis to several genera of cyprinids (e.g. Gila, Acrocheilus) also endemic to western North America. This characterized mitogenome may help inform management practices for S. b. mohavensis by facilitating future studies on how allopatric populations of this imperiled species are evolving across refuge habitats.

SUBMITTER: Glaser FL

PROVIDER: S-EPMC7800675 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

The complete mitochondrion genome of the Barbodes hexagonolepis (Cypriniformes, cyprinidae).

Project description:The Barbodes hexagonolepis, as an important commercial species, had the limited resources on biology and genetics. We reported the complete mitogenome of this species, and got a whole length of 16 587 bp (containing two rRNAs, 22 tRNAs, 13 mRNAs and one D-loop region). The two rRNAs located between tRNAphe and tRNAleu and were separated by tRNAval. The 22 tRNAs was ranged from 66 bp (tRNAcys) to 76 bp (tRNAleu and tRNAlys) in length. The 13 mRNAs had four overlap regions, three types of start codons and four types of termination codons. The D-loop region was found between tRNAPro and tRNAPhe. To further explore the phylogenetic relationship of the B. hexagonolepis, we constructed the phylogenetic tree and verified that the B. hexagonolepi was a part of the Barbinae and independent from other genus of the Barbinae. This result provided the valuable evidence on phylogenetic relationship of the B. hexagonolepi at the molecular level and essential resource for further research on this species.

| S-EPMC7799650 | biostudies-literature

Complete mitochondrial genome of the endangered freshwater fish Microphysogobio rapidus (Cypriniformes, Cyprinidae) from Korea.

Project description:Microphysogobio rapidus is an endangered freshwater fish from Korea with a limited distribution in the Nakdong River. Here, we determined the mitochondrial genome of M. rapidus, which consisted of 16,603 bp with 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNA genes, and a control region (D-loop). The overall base composition of the complete genome was 29.96% A, 26.06% T, 17.24% G, and 26.74% C, with high A + T content of 56.02%.

| S-EPMC7748834 | biostudies-literature

The complete mitochondrial genome of Leuciscus merzbacheri (Cypriniformes: Cyprinidae)

Project description:Abstract Leuciscus merzbacheri (Zugmayer, 1912) is a cyprinid fish endemic to China, with a distribution range limited to Xinjiang Province. As a landmark species in the Junggar Basin, L. merzbacheri is of considerable significance regarding our understanding of the adaptive evolution of salt and alkali tolerance. In this study, the complete mitochondrial sequence of L. merzbacheri was obtained for the first time by high-throughput sequencing. The circular mitogenome is 16,609 bp in length and contains the standard 37 genes, including 13 protein-coding, 22 transfer RNA, and 2 ribosomal RNA genes, which is similar to that of other fish. The mitogenome contents of A, T, C, and G were 27.9, 26.3, 27.1, and 18.7%, respectively. Phylogenetically, L. merzbacheri was located on a new branch near the base of the phylogenetic tree, thereby suggesting an early origin.

| S-EPMC10035939 | biostudies-literature

Complete mitochondrial genome of Schizothorax davidi (Teleostei: Cypriniformes: Cyprinidae).

Project description:This study provides a mitochondrial complete genome of Schizothorax davidi. The complete genome is 16,576 bp in length with an A + T content of 54.9%, which contains 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes. The phylogenetic analysis indicated that S. davidi is closely related to Schizothorax lissolabiatus. These results contribute to explore the adaptation strategy of S. davidi on the conditions of Qinghai-Tibet Plateau.

| S-EPMC7707262 | biostudies-literature

Complete mitochondrial genome of Schizothorax gongshanensis (Cypriniformes: Cyprinidae).

Project description:In this study, the complete mitochondrial DNA of Schizothorax gongshanensis was determined. The complete genome is 16,591?bp in length which contains 13 protein-coding genes, 22 transfer RNA genes, 2 rRNA genes, an origin of light-strand replication (OL) and a control region (D-Loop). The complete mtDNA sequence of S. gongshanensis provides a useful genetic marker for the studies on molecular systematics, population genetics and stock assessment.

| S-EPMC7800125 | biostudies-literature

The complete mitochondrial genome of Neolissochilus benasi (Cypriniformes: Cyprinidae).

Project description:In this study, the complete mitochondrial genome of Neolissochilus benasi has been determined by polymerase chain reaction method for the first time. The overall base composition of N. benasi mitogenome is 31.8% for A, 27.4% for C, 15.9% for G and 25.0% for T. The percentage of G + C content is 41.3%. The mitogenome is a circular DNA molecule of 16 583 bp in length with a D-loop region and contains 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes and 13 protein-coding genes. The mitochondrial genome sequencing for N. benasi in this study provides important molecular data for further evolutionary analysis for Cyprinoidea.

| S-EPMC7748629 | biostudies-literature

The complete mitochondrial genome of Ancherythroculter kurematsui (Cypriniformes: Cyprinidae).

Project description:Ancherythroculter kurematsui (A. kurematsui) is a unique small-size freshwater fish in southwest China. In this study, the complete mitochondrial genome of A. kurematsui was determined (GenBank accession number is KU234534). The mitochondrial genome sequence of A. kurematsui was a circular molecule with 16,621 bp in length, and contained 37 typical animal mitochondrial genes including 2 ribosomal RNA genes, 13 protein-coding genes, 22 transfer RNA genes and a control region (D-loop). Four nucleotide compositions and their relative proportions of the entire mitogenome was 27.69% C, 16.16% G, 31.21% A and 24.93% T, with an A + T and G + C contents being 56.14% and 43.86%, respectively.

| S-EPMC7800160 | biostudies-literature

The complete mitochondrial genome of Shizothorax grahami (Cypriniformes: Cyprinidae).

Project description:Shizothorax grahami (S. grahami) is an underlying economic cold-freshwater fish in southwest China. In this study, the complete mitochondrial genome of S. grahami was determined (GenBank accession number is NC_029708). The mitochondrial genome sequence of S. grahami was a circular molecule with 16,584 bp in length, and contained 37 typical animal mitochondrial genes including 2 ribosomal RNA genes, 13 protein-coding genes, 22 transfer RNA genes and a control region (D-loop). Four nucleotide compositions and their relative proportions of the entire mitogenome was 27.14% C, 19.93% G, 29.58% A and 25.34% T. Among most species of genus Shizothorax, Schizothorax davidi had the closest relationship with S. grahami, and then Schizothorax prenanti.

| S-EPMC7800967 | biostudies-literature

Complete mitochondrial genome of a cavefish Sinocyclocheilus ronganensis (Cypriniformes: Cyprinidae).

Project description:In this study, we report the complete mitochondrial genome of Sinocyclocheilus ronganensis. The whole mitochondrial genome is 16,587?bp with an accession number KX778473, and consists of 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs genes, and a 936?bp control region. Phylogenetic analysis shows that S. ronganensis is close to cave-restricted S. anophthalmus and surface-dwelling S. grahami. The complete mitogenome of S. ronganensis may provide useful information for studying the genetic mechanism of cavefish, and enrich the fish mitochondrial genome resource for further research.

| S-EPMC7800113 | biostudies-literature

The complete mitochondrial genome of the Gymnocypris chui (Cypriniformes: Cyprinidae).

Project description:The Gymnocypris chui, a new recorded species in Lange Lake, was grouped into genus Gymnocypris in Schizothoracinae, and had the rare quantity and limited resources on biology and genetics, especially in the mitochondrion. In this study, the complete mitochondrial sequence of G. chui was assembled and phylogenetic relationships with other species in Cyprinidae were analyzed. The whole mitochondrial sequence was 16,864?bp in length, which contained two control regions (D-loop regions), two rRNA genes (12S and 16S rRNA), 13 protein-coding genes and 22 tRNA genes. The D-loop region was separated by tRNAPro . The 12S rRNA and 16S rRNA located between tRNAPhe and tRNALeu and were separated by tRNAVal . The 13 mRNAs had three start codons, five termination codons and four overlap regions. The 22 tRNA scattered among the whole mitochondrion, and they were range from 66 (tRNACys ) to 76 (tRNALys andtRNALeu ) in length. To further explore the phylogenetic relationship of the G. chui, we constructed the phylogenetic tree and verified that the G. chui was a part of genus Gymnocypris and had closer relationship with Gymnocypris dobula and was independent from other species of Schizothoracinae, Barbinae and Labeoninae in Cyprinidae. This study provided the valuable evidence on phylogenetic relationship of the G. chui at the molecular level and essential resource for further research on this species.

| S-EPMC7800463 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data