Unknown

Dataset Information

0

The complete chloroplast genome sequence with a novel 24-bp deletion of a Korean solid green-type cucumber variety (Cucumis sativus var. sativus).


ABSTRACT: Cucumber (Cucumis sativus var. sativus) is one of the economically important vegetable crops. In this study, we characterized the complete chloroplast genome sequence of inbred line ID YHB bred from Korean solid green-type cucumber variety, through de novo assembly using next-generation sequencing. The chloroplast genome is 155,501?bp long and has typical quadripartite structures and gene contents as found in reported cucumber chloroplast genomes. Interestingly, sequence comparison revealed a novel 24-bp deletion present only in the chloroplast genome of the inbred line. Phylogenetic analysis confirmed that the inbred line was closely grouped with cucumber cultivars.

SUBMITTER: Lee SC 

PROVIDER: S-EPMC7800926 | biostudies-literature | 2017 Nov

REPOSITORIES: biostudies-literature

altmetric image

Publications

The complete chloroplast genome sequence with a novel 24-bp deletion of a Korean solid green-type cucumber variety (<i>Cucumis sativus</i> var. <i>sativus</i>).

Lee Sang-Choon SC   Lee Hyun Oh HO   Joh Ho Jun HJ   Kim Inseo I   Lee Won-Kyung WK   Yang Tae-Jin TJ   Song Kihwan K  

Mitochondrial DNA. Part B, Resources 20171106 2


Cucumber (<i>Cucumis sativus</i> var. <i>sativus</i>) is one of the economically important vegetable crops. In this study, we characterized the complete chloroplast genome sequence of inbred line ID YHB bred from Korean solid green-type cucumber variety, through <i>de novo</i> assembly using next-generation sequencing. The chloroplast genome is 155,501 bp long and has typical quadripartite structures and gene contents as found in reported cucumber chloroplast genomes. Interestingly, sequence com  ...[more]

Similar Datasets

2015-05-01 | GSE57294 | GEO
| S-EPMC4468104 | biostudies-literature
| S-EPMC1163627 | biostudies-other
| S-EPMC7346245 | biostudies-literature
| S-EPMC3470563 | biostudies-literature
| S-EPMC6582320 | biostudies-literature
| S-EPMC6051622 | biostudies-literature
| S-EPMC5399834 | biostudies-literature
| S-EPMC3539955 | biostudies-literature
2018-08-20 | GSE111998 | GEO