Dataset Information

Are Presence/Absence Microbial Tests Appropriate for Monitoring Large Urban Water Supplies in Sub-Saharan Africa?

ABSTRACT: Screening for fecal contamination via microbial water quality monitoring is a critical component of safe drinking water provision and public health protection. Achieving adequate levels of microbial water quality testing, however, is a challenge in resource-limited settings. One strategy for addressing this challenge is to improve the efficiency of monitoring programs. In African countries, quantitative microbial testing methods are commonly used to monitor chlorinated piped water systems. However, presence/absence (P/A) tests may provide an appropriate alternative for water supplies that generally show negative fecal contamination results. This study compares 1048 water quality test results for samples collected from five African urban water systems. The operators of the systems conducted parallel tests on the 1048 samples using their standard quantitative methods (e.g., most probable number or membrane filtration) and the Colitag™ method in P/A format. Combined data demonstrates agreement rates of 97.9% (1024/1046) for detecting total coliforms and 97.8% (1025/1048) for detecting E. coli. We conclude that the P/A test offers advantages as a simpler and similarly sensitive measure of potential fecal contamination for large, urban chlorinated water systems. P/A tests may also offer a cost-effective alternative to quantitative methods, as they are quicker to perform and require less laboratory equipment.

SUBMITTER: MacLeod C

PROVIDER: S-EPMC7839616 | biostudies-literature | 2019

REPOSITORIES: biostudies-literature

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Are Presence/Absence Microbial Tests Appropriate for Monitoring Large Urban Water Supplies in Sub-Saharan Africa?

MacLeod Clara C Peletz Rachel R Kere Francis F Baye Aminata M' AM Onyango Michael M Aw Sadat S El Hadj Issabre Mamadou M Tung Rosalind R Khush Ranjiv R

Water 20190308 3

Screening for fecal contamination via microbial water quality monitoring is a critical component of safe drinking water provision and public health protection. Achieving adequate levels of microbial water quality testing, however, is a challenge in resource-limited settings. One strategy for addressing this challenge is to improve the efficiency of monitoring programs. In African countries, quantitative microbial testing methods are commonly used to monitor chlorinated piped water systems. Howev ...[more]

PMID: 33552563

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Project description:Sub-Saharan Africa represents 69% of the total number of individuals living with HIV infection worldwide and 72% of AIDS deaths globally. Pulmonary infection is a common and frequently fatal complication, though little is known regarding the lower airway microbiome composition of this population. Our objectives were to characterize the lower airway microbiome of Ugandan HIV-infected patients with pneumonia, to determine relationships with demographic, clinical, immunological, and microbiological variables and to compare the composition and predicted metagenome of these communities to a comparable cohort of patients in the US (San Francisco). Bronchoalveolar lavage samples from a cohort of 60 Ugandan HIV-infected patients with acute pneumonia were collected. Amplified 16S ribosomal RNA was profiled and aforementioned relationships examined. Ugandan airway microbiome composition and predicted metagenomic function were compared to US HIV-infected pneumonia patients. Among the most common bacterial pulmonary pathogens, Pseudomonas aeruginosa was most prevalent in the Ugandan cohort. Patients with a richer and more diverse airway microbiome exhibited lower bacterial burden, enrichment of members of the Lachnospiraceae and sulfur-reducing bacteria and reduced expression of TNF-alpha and matrix metalloproteinase-9. Compared to San Franciscan patients, Ugandan airway microbiome were significantly richer, and compositionally distinct with predicted metagenomes that encoded a multitude of distinct pathogenic pathways e.g secretion systems. Ugandan pneumonia-associated airway microbiome is compositionally and functionally distinct from those detected in comparable patients in developed countries, a feature which may contribute to adverse outcomes in this population. Please note that the data from the comparable cohort of patients in the USUS data was published as supplemental material of PMID: 22760045 but not submitted to GEO The 'patient_info.txt' contains 12 clinical, 7 immunological and 3 microbiological variables for each patient.

Dataset Information

Are Presence/Absence Microbial Tests Appropriate for Monitoring Large Urban Water Supplies in Sub-Saharan Africa?

Publications

Are Presence/Absence Microbial Tests Appropriate for Monitoring Large Urban Water Supplies in Sub-Saharan Africa?

Similar Datasets

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