Dataset Information

Integrative Analyses of Genes Associated With Osteoporosis in CD16+ Monocyte.

ABSTRACT:

Background

Osteoporosis is a metabolic bone disease characterized by decreased bone mineral density and abnormal bone quality. Monocytes can secret cytokines for bone resorption, resulting in bone mass loss. However, the mechanism by which monocytes subpopulations lead to osteoporosis remains unclear. The aim of this study was to identify genes associated with osteoporosis in monocytes subsets.

Methods

Three microarray datasets including GSE7158 (transcription of low/high-peak bone mass), GSE101489 (transcription of CD16+/CD16- monocyte) and GSE93883 (miRNA expression profile of primary osteoporosis) were derived from the Gene Expression Omnibus (GEO) database and analyzed with GEO2R tool to identify differentially expressed genes (DEGs). Functional enrichment was analyzed using Metascape database and GSEA software. STRING was utilized for the Protein-Protein Interaction Network construct. The hub genes were screened out using the Cytoscape software. Related miRNAs were predicted in miRWalk, miRDB, and TargetScan databases.

Results

Total 368 DEGs from GSE7158 were screened out, which were mostly enriched in signaling, positive regulation of biological process and immune system process. The hub genes were clustered into two modules by PPI network analysis. We identified 15 overlapping DGEs between GSE101489 and GSE7158 microarray datasets. Moreover, all of them were up-regulated genes in both datasets. Then, nine key genes were screened out from above 15 overlapping DEGs using Cytoscape software. It is a remarkable fact that the nine genes were all in one hub gene module of GSE7158. Additionally, 183 target miRNAs were predicted according to the above nine DEGs. After cross-verification with miRNA express profile dataset for osteoporosis (GSE93883), 12 DEmiRNAs were selected. Finally, a miRNA-mRNA network was constructed with the nine key genes and 12 miRNAs, which were involved in osteoporosis.

Conclusion

Our analysis results constructed a gene expression framework in monocyte subsets for osteoporosis. This approach could provide a novel insight into osteoporosis.

SUBMITTER: Hu B

PROVIDER: S-EPMC7859337 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Publications

Integrative Analyses of Genes Associated With Osteoporosis in CD16+ Monocyte.

Hu Bin B Kong Xiangan X Li Li L Dai Fang F Zhang Qiu Q Shi Ruifeng R

Frontiers in endocrinology 20210121

<h4>Background</h4>Osteoporosis is a metabolic bone disease characterized by decreased bone mineral density and abnormal bone quality. Monocytes can secret cytokines for bone resorption, resulting in bone mass loss. However, the mechanism by which monocytes subpopulations lead to osteoporosis remains unclear. The aim of this study was to identify genes associated with osteoporosis in monocytes subsets.<h4>Methods</h4>Three microarray datasets including GSE7158 (transcription of low/high-peak bon ...[more]

PMID: 33551990

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Dataset Information

Integrative Analyses of Genes Associated With Osteoporosis in CD16+ Monocyte.

Background

Methods

Results

Conclusion

Publications

Integrative Analyses of Genes Associated With Osteoporosis in CD16+ Monocyte.

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