Browse
Submit Data
Databases
API
Help

Dataset Information

19 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Characterization of the complete mitochondrial genome of Priacanthus tayenus (Perciformes: Priacanthidae) with phylogenetic consideration.

ABSTRACT: The complete mitochondrial genome of the Priacanthus tayenus was sequenced and analyzed in this study. The mitochondrial genome is 16,866?bp long and consists of 13 protein-coding genes, two rRNA genes, 22 tRNA genes and a control region. The gene order and the composition of P. tayenus mitochondrial genome were similar to that of most other vertebrates. The nucleotide composition of the light strand in descending order is 30.91% of G, 26. 35% of T, 25.61% of A and 17.13% of C. The NADH dehydrogenase subunit 6 (ND6) and eight tRNA genes were localized in the light strand, and all other mitochondrial genes were encoded on the heavy strand. The phylogenetic analysis by maximum-likelihood (ML) method revealed that the P. tayenus showed the closer relationship to the Sciaenops ocellatus.

SUBMITTER: Chen H

PROVIDER: S-EPMC7871866 | biostudies-literature | 2016 Mar

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Characterization of the complete mitochondrial genome of Priacanthus tayenus (Perciformes: Priacanthidae) with phylogenetic consideration.

Chen Huapu H Deng Siping S Yang Huirong H Ma Xilan X Zhu Chunhua C Huang Hai H Li Guangli G

Mitochondrial DNA. Part B, Resources 20160328 1

The complete mitochondrial genome of the Priacanthus tayenus was sequenced and analyzed in this study. The mitochondrial genome is 16,866 bp long and consists of 13 protein-coding genes, two rRNA genes, 22 tRNA genes and a control region. The gene order and the composition of P. tayenus mitochondrial genome were similar to that of most other vertebrates. The nucleotide composition of the light strand in descending order is 30.91% of G, 26. 35% of T, 25.61% of A and 17.13% of C. The ...[more]

PMID: 33644351

Similar Datasets

The complete mitochondrial genome of Acanthopagrus schlegelii (Perciformes: Sparidae) with phylogenetic consideration.

Project description:The complete mitochondrial genome of the Acanthopagrus schlegelii was presented in this study. The mitochondrial genome is 16,798 bp long and consists of 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and a control region. The gene order and composition of A. schlegelii mitochondrial genome was similar to that of most other vertebrates. The nucleotide compositions of the light strand in descending order is 28.04% of T, 27.94% of G, 27.87% of A and 16.15% of C. With the exception of the NADH dehydrogenase subunit 6 (ND6) and 8 tRNA genes, all other mitochondrial genes are encoded on the heavy strand. The phylogenetic analysis by maximum-likelihood method shown that he A. schlegelii has the closer relationship to the Rhabdosargus sarba in the phylogenetic relationship.

| S-EPMC7800553 | biostudies-literature

The complete mitochondrial genome of Acanthopagrus schlegelii (Perciformes: Sparidae) with phylogenetic consideration.

Project description:The complete mitochondrial genome of the Acanthopagrus schlegelii was presented in this study. The mitochondrial genome is 16 798 bp long and consists of 13 protein-coding genes, two rRNA genes, 22 tRNA genes and a control region. The gene order and composition of Acanthopagrus schlegelii mitochondrial genome was similar to that of most other vertebrates. The nucleotide compositions of the light strand in descending order is 28.04% of T, 27.94% of G, 27.87% of A and 16.15% of C. With the exception of the NADH dehydrogenase subunit 6 (ND6) and eight tRNA genes, all other mitochondrial genes are encoded on the heavy strand. The phylogenetic analysis by maximum-likelihood (ML) method shown that the Acanthopagrus schlegelii has the closer relationship to the Rhabdosargus sarba in the phylogenetic relationship.

| S-EPMC7800163 | biostudies-literature

The complete mitochondrial genome sequence and gene organization of Istigobius campbelli (Perciformes, Gobiidae) with phylogenetic consideration.

Project description:The complete mitochondrial genome DNA sequence of Istigobius campbelli was 16,527?bp in length. It consists of 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and 1 control region. 28 of the 37 genes were encoded on the heavy strand, and 9 of them were encoded on the light strand. The overall base composition of the genome is 27.84% A, 25.81% T, 29.68% C, and 16.67% G. The phylogenetic tree suggested I. campbelli was genetically closest to Acentrogobius pflaumii and Oxyurichthys formosanus. This study could provide valuable information for further studies on I. campbelli.

| S-EPMC7687455 | biostudies-literature

The complete mitochondrial genome sequence and gene organization of Trematomus bernacchii (Perciformes: Nototheniidae) with phylogenetic consideration.

Project description:In this study, the complete mitochondrial DNA sequence was obtained from Trematomus bernacchii. The full length of mitogenome was 16 018 bp, including 20 transfer RNA genes, a 16S ribosomal RNA genes and an incomplete 12S rRNA, 12 protein-coding genes and an incomplete ND6 protein-coding gene, and 2 non-coding regions: control region (D-loop) and origin of light-strand (L-strand) replication (OL). Most genes were located on the heavy-strand (H-strand), while ND6 and seven tRNA genes were located on the L-strand. T. bernacchii's mitogenome was comprised of 24.52% for A, 25.44% for C, 20.38% for G and 29.66% for T, with a higher A + T content (54.18%). From the NJ phylogenetic tree, it revealed that T. bernacchii's was genetically closest to species Dissostichus eleginoides among seven species within suborder Notothenioidei. This study could lay the foundation for the future studies in species identification, taxonomic status, molecular systematics, stock evaluation and conservation genetics for T. bernacchii's.

| S-EPMC7800238 | biostudies-literature

The complete mitochondrial genome sequence and gene organization of Cryodraco antarcticus (Perciformes, Channichthyidae) with phylogenetic consideration.

Project description:The complete mitochondrial genome DNA sequence of Cryodraco antarcticus was 17,857 bp in size. It consists of 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and one control region. Among 22 tRNA genes, 8 tRNAs were encoded on the L-strand. The overall base composition of the genome is 26.45% for A, 25.96% for T, 29.78% for C, and 17.81% for G. The phylogenetic tree suggested C. antarcticus was genetically closest to some species in family Channichthyidae. This study could provide valuable information for further studies on population structure, conservation genetics and molecular evolution of C. antarcticus.

| S-EPMC7748647 | biostudies-literature

Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration.

Project description:Gymnodraco acuticepsis is an Antarctic fish living in the Southern Ocean. Until now, studies on G. acuticeps are still limited. As an Antarctic fish, obtaining and characterization of the mitochondrial genome of G. acuticeps will be important for elucidation of the mechanism of cold-adapting evolution in mitochondrion. In this study, we first isolated and characterized the mitochondrial genome sequence of G. acuticeps with 15,987?bp in length. It contained of 34 genes (12 protein-coding genes, 20 transfer RNA genes, 2 ribosomal RNA genes) and a partial putative control region. Gene organization and nucleotide composition of obtained mito-genome were similar to those of other Antarctic fish. Twenty-eight genes were encoded by heavy strand, while six genes were encoded by light strand. Further, the phylogenetic tree, which based on 12 protein-coding genes, revealed that the G. acuticeps was genetically closest to species Parachaenichthys charcoti among 18 species. We hope this work would be helpful for the population genetics and molecular evolution studies.

| S-EPMC7799673 | biostudies-literature

Complete mitochondrial genome of Caranx equula (Perciformes, Carangidae): genome characterization and phylogenetic analysis.

Project description:Caranx equula is an important marine fish which due to its commercial values. However, some wild populations of C. equula are in danger because of the overfishing and environmental pollution. In this study, the complete mitochondrial genome of C. equula was firstly determined. The complete mitochondrial genome is 16,607 base pairs in length, and contained 13 protein-coding genes and 2 ribosomal RNA genes, 22 tRNA genes and 2 main non-coding regions. Overall A?+?T content was 52.9%. In addition, a phylogenetic tree was constructed using the complete mitochondrial genome and showed that C. equula clustered in a clade and formed a sister relationship with Caranx ignobilis belonged to the family of Carangidae.

| S-EPMC7799722 | biostudies-literature

The next-generation sequencing reveals the complete mitochondrial genome of Alosa sapidissima (Perciformes: Clupeidae) with phylogenetic consideration.

Project description:The complete mitochondrial genome of the Alosa sapidissima is presented in this study. The mitochondrial genome is 16,741?bp long and consists of 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a control region. The gene order and composition of Epinephelus awoara mitochondrial genome was similar to that of most other vertebrates. The nucleotide compositions of the light strand in descending order is 28.79% of G, 28.39% of T, 24.94% of A, and 17.88% of C. With the exception of the NADH dehydrogenase subunit 6 (ND6) and 8 tRNA genes, all other mitochondrial genes are encoded on the heavy strand. The phylogenetic analysis by maximum-likelihood (ML) method showed that the A. sapidissima has the closer relationship to between the A. alosa and A. pseudoharengus in the phylogenetic relationship.

| S-EPMC7799985 | biostudies-literature

Characterization of the complete mitochondrial genome of Diodon hystrix with phylogenetic consideration.

Project description:In this study, the complete mitochondrial genome of Diodon hystrix was sequenced and analyzed. The mitochondrial genome is 16,512 bp long and consists of 13 protein-coding genes, two rRNA genes, 22 tRNA genes and a control region. The gene order and composition of D. hystrix mitochondrial genome was similar to that of most other vertebrates. The nucleotide composition of the light strand in descending order is 28.69% of A, 31.64% of C, 23.66% of T and 16% of G. The NADH dehydrogenase subunit 6 (ND6) and 8 tRNA genes were localized in the light strand, and all other mitochondrial genes were encoded on the heavy strand. The phylogenetic analysis by maximum-likelihood (ML) method revealed that D. hystrix has the closer relationship to the Diodon holocanthus.

| S-EPMC7799933 | biostudies-literature

Characterization of the complete mitochondrial genome of Diodon liturosus with phylogenetic consideration.

Project description:In this study, the complete mitochondrial genome of Diodon liturosus was sequenced and analyzed. The mitochondrial genome is 16,512 bp long and consists of 13 protein-coding genes, two rRNA genes, 22 tRNA genes and a control region. The gene order and composition of D. liturosus mitochondrial genome was similar to that of most other vertebrates. The nucleotide composition of the light strand in descending order is 28.69% of A, 31.64% of C, 23.66% of T and 16% of G. The NADH dehydrogenase subunit 6 (ND6) and 8 tRNA genes were localized in the light strand, and all other mitochondrial genes were encoded on the heavy strand. The phylogenetic analysis by maximum-likelihood method revealed that D. liturosus has the closer relationship to the Diodon holocanthus.

| S-EPMC7800658 | biostudies-literature