Dataset Information

The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species.

ABSTRACT: Progress in the field of evolutionary forest ecology has been hampered by the huge challenge of phenotyping trees across their ranges in their natural environments, and the limitation in high-resolution environmental information. The GenTree Platform contains phenotypic and environmental data from 4,959 trees from 12 ecologically and economically important European forest tree species: Abies alba Mill. (silver fir), Betula pendula Roth. (silver birch), Fagus sylvatica L. (European beech), Picea abies (L.) H. Karst (Norway spruce), Pinus cembra L. (Swiss stone pine), Pinus halepensis Mill. (Aleppo pine), Pinus nigra Arnold (European black pine), Pinus pinaster Aiton (maritime pine), Pinus sylvestris L. (Scots pine), Populus nigra L. (European black poplar), Taxus baccata L. (English yew), and Quercus petraea (Matt.) Liebl. (sessile oak). Phenotypic (height, diameter at breast height, crown size, bark thickness, biomass, straightness, forking, branch angle, fructification), regeneration, environmental in situ measurements (soil depth, vegetation cover, competition indices), and environmental modeling data extracted by using bilinear interpolation accounting for surrounding conditions of each tree (precipitation, temperature, insolation, drought indices) were obtained from trees in 194 sites covering the species' geographic ranges and reflecting local environmental gradients. The GenTree Platform is a new resource for investigating ecological and evolutionary processes in forest trees. The coherent phenotyping and environmental characterization across 12 species in their European ranges allow for a wide range of analyses from forest ecologists, conservationists, and macro-ecologists. Also, the data here presented can be linked to the GenTree Dendroecological collection, the GenTree Leaf Trait collection, and the GenTree Genomic collection presented elsewhere, which together build the largest evolutionary forest ecology data collection available.

SUBMITTER: Opgenoorth L

PROVIDER: S-EPMC7970660 | biostudies-literature | 2021 Mar

REPOSITORIES: biostudies-literature

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The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species.

Opgenoorth Lars L Dauphin Benjamin B Benavides Raquel R Heer Katrin K Alizoti Paraskevi P Martínez-Sancho Elisabet E Alía Ricardo R Ambrosio Olivier O Audrey Albet A Auñón Francisco F Avanzi Camilla C Avramidou Evangelia E Bagnoli Francesca F Barbas Evangelos E Bastias Cristina C CC Bastien Catherine C Ballesteros Eduardo E Beffa Giorgia G Bernier Frédéric F Bignalet Henri H Bodineau Guillaume G Bouic Damien D Brodbeck Sabine S Brunetto William W Buchovska Jurata J Buy Melanie M Cabanillas-Saldaña Ana M AM Carvalho Bárbara B Cheval Nicolas N Climent José M JM Correard Marianne M Cremer Eva E Danusevičius Darius D Del Caño Fernando F Denou Jean-Luc JL di Gerardi Nicolas N Dokhelar Bernard B Ducousso Alexis A Eskild Nilsen Anne A Farsakoglou Anna-Maria AM Fonti Patrick P Ganopoulos Ioannis I García Del Barrio José M JM Gilg Olivier O González-Martínez Santiago C SC Graf René R Gray Alan A Grivet Delphine D Gugerli Felix F Hartleitner Christoph C Hollenbach Enja E Hurel Agathe A Issehut Bernard B Jean Florence F Jorge Veronique V Jouineau Arnaud A Kappner Jan-Philipp JP Kärkkäinen Katri K Kesälahti Robert R Knutzen Florian F Kujala Sonja T ST Kumpula Timo A TA Labriola Mariaceleste M Lalanne Celine C Lambertz Johannes J Lascoux Martin M Lejeune Vincent V Le-Provost Gregoire G Levillain Joseph J Liesebach Mirko M López-Quiroga David D Meier Benjamin B Malliarou Ermioni E Marchon Jérémy J Mariotte Nicolas N Mas Antonio A Matesanz Silvia S Meischner Helge H Michotey Célia C Milesi Pascal P Morganti Sandro S Nievergelt Daniel D Notivol Eduardo E Ostreng Geir G Pakull Birte B Perry Annika A Piotti Andrea A Plomion Christophe C Poinot Nicolas N Pringarbe Mehdi M Puzos Luc L Pyhäjärvi Tanja T Raffin Annie A Ramírez-Valiente José A JA Rellstab Christian C Remi Dourthe D Richter Sebastian S Robledo-Arnuncio Juan J JJ San Segundo Sergio S Savolainen Outi O Schueler Silvio S Schneck Volker V Scotti Ivan I Semerikov Vladimir V Slámová Lenka L Sønstebø Jørn Henrik JH Spanu Ilaria I Thevenet Jean J Tollefsrud Mari Mette MM Turion Norbert N Vendramin Giovanni Giuseppe GG Villar Marc M von Arx Georg G Westin Johan J Fady Bruno B Myking Tor T Valladares Fernando F Aravanopoulos Filippos A FA Cavers Stephen S

GigaScience 20210301 3

<h4>Background</h4>Progress in the field of evolutionary forest ecology has been hampered by the huge challenge of phenotyping trees across their ranges in their natural environments, and the limitation in high-resolution environmental information.<h4>Findings</h4>The GenTree Platform contains phenotypic and environmental data from 4,959 trees from 12 ecologically and economically important European forest tree species: Abies alba Mill. (silver fir), Betula pendula Roth. (silver birch), Fagus sy ...[more]

PMID: 33734368

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Dataset Information

The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species.

Publications

The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species.

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