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Quantum Chemical Microsolvation by Automated Water Placement.

ABSTRACT: We developed a quantitative approach to quantum chemical microsolvation. Key in our methodology is the automatic placement of individual solvent molecules based on the free energy solvation thermodynamics derived from molecular dynamics (MD) simulations and grid inhomogeneous solvation theory (GIST). This protocol enabled us to rigorously define the number, position, and orientation of individual solvent molecules and to determine their interaction with the solute based on physical quantities. The generated solute-solvent clusters served as an input for subsequent quantum chemical investigations. We showcased the applicability, scope, and limitations of this computational approach for a number of small molecules, including urea, 2-aminobenzothiazole, (+)-syn-benzotriborneol, benzoic acid, and helicene. Our results show excellent agreement with the available ab initio molecular dynamics data and experimental results.

SUBMITTER: Steiner M

PROVIDER: S-EPMC8005176 | biostudies-literature | 2021 Mar

REPOSITORIES: biostudies-literature

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Quantum Chemical Microsolvation by Automated Water Placement.

Steiner Miguel M Holzknecht Tanja T Schauperl Michael M Podewitz Maren M

Molecules (Basel, Switzerland) 20210323 6

We developed a quantitative approach to quantum chemical microsolvation. Key in our methodology is the automatic placement of individual solvent molecules based on the free energy solvation thermodynamics derived from molecular dynamics (MD) simulations and grid inhomogeneous solvation theory (GIST). This protocol enabled us to rigorously define the number, position, and orientation of individual solvent molecules and to determine their interaction with the solute based on physical quantities. T ...[more]

PMID: 33806731

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