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Genetic Evolution and Implications of the Mitochondrial Genomes of Two Newly Identified Taenia spp. in Rodents From Qinghai-Tibet Plateau.

ABSTRACT: The larva of Taeniidae species can infect a wide range of mammals, causing major public health and food safety hazards worldwide. The Qinghai-Tibet Plateau (QTP), a biodiversity hotspot, is home to many species of rodents, which act as the critical intermediate hosts of many Taeniidae species. In this study, we identified two new larvae of Taenia spp., named T. caixuepengi and T. tianguangfui, collected from the plateau pika (Ochotona curzoniae) and the Qinghai vole (Neodon fuscus), respectively, in QTP, and their mitochondrial genomes were sequenced and annotated. Phylogenetic trees based on the mitochondrial genome showed that T. caixuepengi has the closest genetic relationship with T. pisiformis, while T. tianguangfui was contained in a monophyletic group with T. crassiceps, T. twitchelli, and T. martis. Biogeographic scenarios analysis based on split time speculated that the speciation of T. caixuepengi (∼5.49 Mya) is due to host switching caused by the evolution of its intermediate host. Although the reason for T. tianguangfui (∼13.11 Mya) speciation is not clear, the analysis suggests that it should be infective to a variety of other rodents following the evolutionary divergence time of its intermediate host and the range of intermediate hosts of its genetically close species. This study confirms the species diversity of Taeniidae in the QTP, and speculates that the uplift of the QTP has not only a profound impact on the biodiversity of plants and animals, but also that of parasites.

SUBMITTER: Wu YD

PROVIDER: S-EPMC8021716 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Qinghai-Tibet Plateau soil

Project description:Qinghai-Tibet Plateau soil

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Project description:The Tibetan grey wolf (Canis lupus chanco) occupies habitats on the Qinghai-Tibet Plateau, a high altitude (>3000 m) environment where low oxygen tension exerts unique selection pressure on individuals to adapt to hypoxic conditions. To identify genes involved in hypoxia adaptation, we generated complete genome sequences of nine Chinese wolves from high and low altitude populations at an average coverage of 25× coverage. We found that, beginning about 55,000 years ago, the highland Tibetan grey wolf suffered a more substantial population decline than lowland wolves. Positively selected hypoxia-related genes in highland wolves are enriched in the HIF signaling pathway (P?=?1.57E-6), ATP binding (P?=?5.62E-5), and response to an oxygen-containing compound (P?5.30E-4). Of these positively selected hypoxia-related genes, three genes (EPAS1, ANGPT1, and RYR2) had at least one specific fixed non-synonymous SNP in highland wolves based on the nine genome data. Our re-sequencing studies on a large panel of individuals showed a frequency difference greater than 58% between highland and lowland wolves for these specific fixed non-synonymous SNPs and a high degree of LD surrounding the three genes, which imply strong selection. Past studies have shown that EPAS1 and ANGPT1 are important in the response to hypoxic stress, and RYR2 is involved in heart function. These three genes also exhibited significant signals of natural selection in high altitude human populations, which suggest similar evolutionary constraints on natural selection in wolves and humans of the Qinghai-Tibet Plateau.

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| S-EPMC6536505 | biostudies-literature

Physiological response of Kobresia pygmaea to temperature changes on the Qinghai-Tibet Plateau.

Project description:BackgroundThe Qinghai-Tibetan Plateau is experiencing rapid climate warming, which may further affect plant growth. However, little is known about the plant physiological response to climate change.ResultsHere, we select the Kobresia pygmaea, an important perennial Cyperaceae forage, to examine the physiological indices to temperature changes in different growing months. We determined the contents of malondialdehyde, proline, soluble sugars, superoxide dismutase, peroxidation, and catalase activity in leaves and roots of Kobresia pygmaea at 25℃, 10℃, 4℃ and 0℃ from June to September in 2020. The results showed that the content of osmotic adjustment substances in the leaves and roots of Kobresia pygmaea fluctuated greatly with experimental temperature in June and September. The superoxide dismutase activity in the leaves and roots of the four months changed significantly with temperatures. The peroxidation activity in the leaves was higher than that in the roots, while the catalase activity in leaves and roots fluctuates greatly during June, with a relative stable content in other months. Membership function analysis showed that higher temperatures were more harmful to plant leaves, and lower temperatures were more harmful to plant roots. The interaction of organs, growing season and stress temperature significantly affected the physiological indicators.ConclusionsThe physiological indicators of Kobresia pygmaea can actively respond to temperature changes, and high temperature can reduce the stress resistance Kobresia pygmaea. Our findings suggest that the Kobresia pygmaea has high adaptability to climate warming in the future.

| S-EPMC8785552 | biostudies-literature

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