Unknown

Dataset Information

0

Protocol for fractionation-assisted native ChIP (fanChIP) to capture protein-protein/DNA interactions on chromatin.


ABSTRACT: Conventional chromatin immunoprecipitation (ChIP) includes many steps that need to be optimized. Here, we have described a protocol of fractionation-assisted native ChIP (fanChIP) which combines subfractionation and native ChIP to purify protein/chromatin complexes applicable for analyses of both protein-protein and protein-DNA interactions within a short period of time. fanChIP is advantageous as subcellular fractionation removes chromatin-unbound materials before immunoprecipitation, and the chromatin fragmentation by micrococcal nuclease (MNase) in a mild condition enables one-step purification of intact protein/chromatin complexes. For complete details on the use and execution of this protocol, please refer to Miyamoto et al. (2020).

SUBMITTER: Miyamoto R 

PROVIDER: S-EPMC8024768 | biostudies-literature |

REPOSITORIES: biostudies-literature

Similar Datasets

| S-EPMC5587144 | biostudies-literature
| S-EPMC7357673 | biostudies-literature
| S-EPMC3637562 | biostudies-literature
| S-EPMC2790015 | biostudies-literature
| S-EPMC2859366 | biostudies-literature
| S-EPMC3738151 | biostudies-literature
| S-EPMC6857456 | biostudies-literature
| S-EPMC3874837 | biostudies-literature
2024-05-08 | GSE266924 | GEO
2024-03-04 | GSE230097 | GEO