Browse
Submit Data
Databases
API
Help

Dataset Information

21 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Tachyporinae Revisited: Phylogeny, Evolution, and Higher Classification Based on Morphology, with Recognition of a New Rove Beetle Subfamily (Coleoptera: Staphylinidae).

ABSTRACT: Tachyporinae are one of the most phylogenetically problematic subfamilies in the mega-diverse rove beetle family Staphylinidae. Despite its high diversity and abundance in forest micro-environments, with over 1600 species worldwide, several previous studies had refuted the monophyly of this subfamily and its largest tribe, Tachyporini. Based on the results of morphology-based phylogenetic analyses and direct examination of specimens encompassing two extinct and all forty extant genera, a new suprageneric classification of Tachyporinae is proposed here, with the removal of the tribe Mycetoporini into a newly recognized subfamily Mycetoporinae stat. nov. Four tribes with two subtribes are arranged within Tachyporinae sensu nov.: Tachyporini sensu nov. (Tachyporina stat. nov., sensu nov. and Euconosomatina stat. rev., sensu nov.), Vatesini sensu nov., Deropini, and Tachinusini stat. rev., sensu nov. (= Megarthropsini syn. nov.). Urolitus syn. nov. is placed as a junior synonym of Sepedophilus, and Palporus stat. nov. is raised to a distinct genus from a subgenus of Tachyporus sensu. nov., and †Mesotachyporus syn. nov. is treated as synonym of the latter. Mycetoporine Bobitobus stat. rev. is resurrected from synonymy with Lordithon sensu nov., and considered as a valid genus. My revised classification provides a novel framework for taxonomic inventories and ecological studies of these groups.

SUBMITTER: Yamamoto S

PROVIDER: S-EPMC8069000 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Congruence of morphological and molecular phylogenies of the rove beetle subfamily Staphylininae (Coleoptera: Staphylinidae).

Project description:Staphylininae is the third largest subfamily of the enormous family Staphylinidae. Monophyly of Staphylininae and its sister relationship to the subfamily Paederinae have been broadly accepted according to both conventional morphology- and molecular-based phylogenies until the last three years. Recent molecular phylogenies rejected monophyly of Staphylininae and regarded Paederinae as a clade within it. This paper re-evaluates the recent molecular work, aiming to clarify the relationship between Staphylininae and Paederinae and resolve intertribal relationships within Staphylininae. Based on a new six-gene data set (5707 bp) for 92 taxa including Oxyporinae (outgroup), representatives of Paederinae, and members of all extant tribes of Staphylininae from published DNA data in GenBank, we generated a well-resolved phylogeny of Staphylininae with all deep nodes (intertribal relationships) strongly supported, and reassert the hypothesis that Staphylininae is monophyletic and indeed the sister group to Paederinae using both Bayesian and maximum likelihood inference. Additionally, our study is a case-study to show that both outgroup selection and completeness of nucleotide data can influence the outcome of a molecular phylogeny. With an increasing number of staphylinid fossils being discovered, the robust phylogeny of Staphylininae inferred by our research will provide a good framework for understanding the early evolution of this group.

| S-EPMC6805933 | biostudies-literature

Local and Landscape Effects on Carrion-Associated Rove Beetle (Coleoptera: Staphylinidae) Communities in German Forests.

Project description:Intensification of anthropogenic land use is a major threat to biodiversity and thus to essential ecosystem services provided by insects. Rove beetles (Coleoptera: Staphylinidae), which react sensitively to habitat changes, are species-rich colonizers of vertebrate cadavers and contribute to the important ecosystem service of carrion decomposition. The unveiling of anthropogenic and environmental drivers that modify carrion-associated rove beetle communities should improve our understanding of the plasticity of cadaver decay. We report the presence of 80 rove beetle species on 65 decomposing piglet cadavers at forest sites characterized by a gradient of management intensity across three geographic regions in Germany. Local and landscape drivers were revealed that shape beetle abundance, diversity, and community composition. Forest management and regions affect rove beetle abundance, whereas diversity is influenced by local habitat parameters (soil pH, litter cover) and regions. The community composition of rove beetles changes with management intensification by promoting generalist species. Regarding single species, Philonthus decorus and Anotylus mutator are linked to unmanaged forests and Ontholestes tessellatus to highly used forest stands. The spatial information provided about carrion-associated rove beetle communities in German forests is not only of carrion-ecological but also of forensic entomological interest.

| S-EPMC7760899 | biostudies-literature

A new genus and species of Staphylininae rove beetle from the Peruvian Amazon (Coleoptera, Staphylinidae).

Project description:A new monotypic genus of Staphylininae Latreille, 1802 tribe incertae sedis is proposed based on Amazonothops aslaki gen. et sp. nov. from the Peruvian Amazon. Descriptions and illustrations of the new genus and species are provided. Its systematic placement and phylogenetic significance are discussed.

| S-EPMC6978408 | biostudies-literature

The genome sequence of Philonthus cognatus (Stephens, 1832) (Coleoptera, Staphylinidae), a rove beetle.

Project description:We present a genome assembly from an individual male Philonthus cognatus (a rove beetle; Arthropoda; Insecta; Coleoptera; Staphylinidae). The genome sequence is 1,030.6 megabases in span. Most of the assembly is scaffolded into 12 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 20.7 kilobases in length. Gene annotation of this assembly on Ensembl identified 29,629 protein coding genes.

| S-EPMC10333781 | biostudies-literature

Rove beetle subtribes Quediina, Amblyopinina and Tanygnathinina: systematic changes affecting Central European fauna (Coleoptera, Staphylinidae, Staphylinini).

Project description:In preparation for the new edition of the identification keys of rove beetles of Central Europe (Volume 4 of the "Die Käfer Mitteleuropas"), the following systematic problems affecting the Central European fauna of the tribe Staphylinini are addressed: phylogeny-based, new concepts for the subtribes Quediina and Amblyopinina; status of the subtribe Tanygnathinina; systematic position of the genus Astrapaeus; status of Quedionuchus, the subgenus of Quedius; identity of some species of Quedius and Heterothops. As a result, new wordwide and Central Europe-based diagnoses are given for the subtribes Quediina and Amblyopinina; earlier recognized but not widely accepted synonymies of the genera Quedius and Velleius, and of the species Heterothops praevius and Heterothops niger, are justified; new synonyms are established for: Quedius pseudonigriceps Reitter, 1909 (= Quediusnoricus Bernhauer, 1927, syn. n.); Quedius maurorufus (Gravenhorst, 1806) (= Quedius richteri Korge, 1966, syn. n.); Quedius suturalis Kiesenwetter, 1845 (= Quedius merlini Drugmand & Bruge 1991, syn. n.); lectotypes are designated for Quedius meridiocarpathicus Smetana, 1958, Quedius noricus Bernhauer, 1927, and Quedius pseudonigriceps Reitter, 1909. As a result of synonymy of Quedius and Velleius, the following new combinations are proposed: Quedius amamiensis (Watanabe, 1990), comb. n.; Quedius circumipectus (Cho, 1996), comb. n.; Quedius elongatus (Naomi, 1986), comb. n.; Quedius japonicus (Watanabe, 1990), comb. n.; Quedius pectinatus (Sharp, 1874), comb. n.; Quedius setosus (Sharp, 1889), comb. n.; Quedius simillimus (Fairmaire, 1891), comb. n. As a result of new combinations, Quedius japonicus (Watanabe, 1990) (non Quedius japonicus Sharp, 1874) is replaced with the new name Quedius watanabei Solodovnikov, nom. n., while Quedius pectinatus Lea, 1908 (non Quedius pectinatus (Sharp, 1874)) is replaced with the new name Quedius arthuri Solodovnikov, nom. n.

| S-EPMC3253661 | biostudies-literature

The complete mitochondrial genome of a rove beetle, Megalinus hunanensis Bordoni, 2013 (Coleoptera: Staphylinidae).

Project description:The complete mitogenome of rove beetle Megalinus hunanensis Bordoni, 2013 was determined in this study. It was 17,314 bp in length, and comprised of 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and a 2511 bp A + T-rich control region. Most PCGs used the typical ATN start codon, except for nad1. Five genes (cox1, cox2, cox3, nad4, and nad5) used a single T residue as stop codon rather than the commonly used TAA or TAG. All tRNAs could be folded into the cloverleaf secondary structure. Bayesian inference phylogenetic trees built on 13 PCGs and their translated amino acid sequences from 29 rove beetle taxa showed that Staphylininae was paraphyletic with respect to Paederinae; M. hunanensis was a member of the tribe Xantholinini.

| S-EPMC8425703 | biostudies-literature

The Oldest Representative of the Rove Beetle Tribe Pinophilini (Coleoptera: Staphylinidae: Paederinae), from Upper Cretaceous Burmese Amber.

Project description:The recently reviewed subtribe Procirrina comprises eight extant genera with a predominately (sub)tropical distribution. Previous phylogenies consistently recover the tribe Pinophilini of the subfamily Paederinae monophyletic. No fossils of the tribe have been described, although compression fossils are known from the Cenozoic Green River Formation (50.3-46.2 Ma) as well as inclusions from the Miocene Dominican (20.43-13.65 Ma) and Mexican (20-15 Ma) ambers. Here we describe †Cretoprocirrus trichotos Jenkins Shaw and Żyła gen. et sp. n., the oldest fossil representative of the tribe Pinophilini, from Upper Cretaceous Burmese amber (ca. 99 Ma). Phylogenetic analyses of morphological data allow its unambiguous placement in the subtribe Procirrina. †Cretoprocirrus trichotos is the second genus of Paederinae described from Burmese amber and provides an important insight into the evolution of the subfamily.

| S-EPMC7142758 | biostudies-literature

New Data, Old Story: Molecular Data Illuminate the Tribal Relationships among Rove Beetles of the Subfamily Staphylininae (Coleoptera: Staphylinidae).

Project description:The megadiverse subfamily Staphylininae traditionally belonged to the best-defined rove beetle taxa, but the advent of molecular phylogenetics in the last decade has brought turbulent changes to the group's classification. Here, we reevaluate the internal relationships among the tribes of Staphylininae by implementing tree inference methods that suppress common sources of systematic error. In congruence with morphological data, and in contrast to some previous phylogenetic studies, we unambiguously recover Staphylininae and Paederinae as monophyletic in the traditional sense. We show that the recently proposed subfamily Platyprosopinae (Arrowinus and Platyprosopus) is a phylogenetic artefact and reinstate Arrowinus as a member of Arrowinini stat. res. and Platyprosopus as a member of Platyprosopini stat. res. We show that several recent changes to the internal classification of the subfamily are phylogenetically unjustified and systematically unnecessary. We, therefore, reestablish Platyprosopini, Staphylinini, and Xantholinini as tribes within Staphylininae (all stat. res.) and recognize Coomaniini as a tribe (stat. nov.) rather than subfamily. Consequently, the traditional ranks of the subtribes Acylophorina, Afroquediina, Amblyopinina, Antimerina, †Baltognathina, Cyrtoquediina, Erichsoniina, Hyptiomina, Indoquediina, Quediina, and Tanygnathinina are restored (all stat. res.). We review the current classification of Staphylininae and discuss sources of incongruence in multigene phylogenies.

| S-EPMC7143346 | biostudies-literature

Revision of the rove beetle genus Antimerus (Coleoptera, Staphylinidae, Staphylininae), a puzzling endemic Australian lineage of the tribe Staphylinini.

Project description:The genus Antimerus Fauvel, 1878, endemic to eastern Australia and Tasmania and a phylogenetically enigmatic member of the large rove beetle tribe Staphylinini, is revised. The genus and each of its four previously known species are redescribed, and a lectotype is designated for Antimerus punctipennis Lea, 1906. Five species are described as new: Antimerus metallicussp. n., Antimerus jamesrodmanisp. n., Antimerus gracilissp. n., Antimerus bellussp. n. and Antimerus monteithisp. n., so that the number of known species in this genus now totals nine. For the first time Antimerus larvae are described, tentatively identified as Antimerus smaragdinus Fauvel, 1878, Antimerus punctipennis and Antimerus metallicus. Available distributional and bionomic data are provided for each species and summarized in the discussion. Adult and larval morphology of Antimerus and its distribution patterns are discussed in the broader context of new data on the evolution of the entire tribe Staphylinini, and with respect to the formation of the Australian fauna of this tribe. The phylogenetic position of Antimerus within Staphylinini remains unresolved pending a targeted formal study. However, a majority of currently available data suggests that it could be a basal member of the recently recovered monophyletic clade of Staphylinini tentatively called "Staphylinini propria".

| S-EPMC3088419 | biostudies-literature

A remarkable new species of the rove beetle genus Anthobium Leach, 1819 from Eocene Baltic amber (Coleoptera, Staphylinidae, Omaliinae).

Project description:An unusual new omaliine species, Anthobium alekseevi sp. nov., is described and illustrated from Eocene Baltic amber, tentatively placed in the megadiverse genus Anthobium Leach, 1819. A new monotypic species-group is established. The new species can easily be distinguished from other species of the genus by the larger body, shape of the subrectangular pronotum, and the presence of a median carina on the prosternum and large, subtriangular tooth on the inner side of each mesotibia, likely exhibiting a peculiar sexual dimorphism in the male. Based on the study of the specimen with support of microtomographic images, a brief comparative analysis of a new species with described extant species of Anthobium is provided.

| S-EPMC7550394 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data