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Identification of Blackberry (Rubus fruticosus) Volatiles as Drosophila suzukii Attractants.

ABSTRACT: The spotted wing drosophila, Drosophila suzukii, is an invasive pest species from Southeast Asia that was recently introduced in Europe and North America. As this fruit fly lays its eggs in ripening soft-skinned fruit, it causes great damage to a variety of crops, including cherries, blueberries, blackberries, raspberries, grapes, plums and strawberries. Consequently, there is a great demand for an effective and species-specific lure, which requires the development of successful attractants. Until now, there is no lure available that is species-specific and can detect the presence of D. suzukii before infestation. As blackberry (Rubus fruticosus) is one of the preferred host crops of D. suzukii, the volatile compounds of R. fruticosus berries are here identified and quantified using multiple headspace SPME (solid phase micro extraction) GC-MS (gas chromatography-mass spectrometry). Subsequently, the attractivity of 33 of the identified compounds was tested with a two-choice laboratory bioassay. Acetaldehyde, hexyl acetate, linalool, myrtenol, L-limonene and camphene came out as significantly attractive to D. suzukii. The first four attractive compounds induced the strongest effect and therefore provided the best prospects to be implemented in a potential lure. These findings could contribute towards the development of more effective attractants for monitoring and mass trapping D. suzukii.

SUBMITTER: Dewitte P

PROVIDER: S-EPMC8148594 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Project description:BackgroundThere is an increasing interest in berries, especially blackberries in the diet, because of recent reports of their health benefits due to their high content of flavonoids. A broad range of genomic tools are available for other Rosaceae species but these tools are still lacking in the Rubus genus, thus limiting gene discovery and the breeding of improved varieties.ResultsDe novo RNA-seq of ripe blackberries grown under field conditions was performed using Illumina Hiseq 2000. Almost 9 billion nucleotide bases were sequenced in total. Following assembly, 42,062 consensus sequences were detected. For functional annotation, 33,040 (NR), 32,762 (NT), 21,932 (Swiss-Prot), 20,134 (KEGG), 13,676 (COG), 24,168 (GO) consensus sequences were annotated using different databases; in total 34,552 annotated sequences were identified. For protein prediction analysis, the number of coding DNA sequences (CDS) that mapped to the protein database was 32,540. Non redundant (NR), annotation showed that 25,418 genes (73.5%) has the highest similarity with Fragaria vesca subspecies vesca. Reanalysis was undertaken by aligning the reads with this reference genome for a deeper analysis of the transcriptome. We demonstrated that de novo assembly, using Trinity and later annotation with Blast using different databases, were complementary to alignment to the reference sequence using SOAPaligner/SOAP2. The Fragaria reference genome belongs to a species in the same family as blackberry (Rosaceae) but to a different genus. Since blackberries are tetraploids, the possibility of artefactual gene chimeras resulting from mis-assembly was tested with one of the genes sequenced by RNAseq, Chalcone Synthase (CHS). cDNAs encoding this protein were cloned and sequenced. Primers designed to the assembled sequences accurately distinguished different contigs, at least for chalcone synthase genes.ConclusionsWe prepared and analysed transcriptome data from ripe blackberries, for which prior genomic information was limited. This new sequence information will improve the knowledge of this important and healthy fruit, providing an invaluable new tool for biological research.

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Identification of Blackberry (Rubus fruticosus) Volatiles as Drosophila suzukii Attractants.

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