A comprehensive review of deep learning-based single image super-resolution.
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ABSTRACT:
SUBMITTER: Bashir SMA
PROVIDER: S-EPMC8293932 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:In recent years, deep learning (DL) networks have been widely used in super-resolution (SR) and exhibit improved performance. In this paper, an image quality assessment (IQA)-guided single image super-resolution (SISR) method is proposed in DL architecture, in order to achieve a nice tradeoff between perceptual quality and distortion measure of the SR result. Unlike existing DL-based SR algorithms, an IQA net is introduced to extract perception features from SR results, calculate corresponding loss fused with original absolute pixel loss, and guide the adjustment of SR net parameters. To solve the problem of heterogeneous datasets used by IQA and SR networks, an interactive training model is established via cascaded network. We also propose a pairwise ranking hinge loss method to overcome the shortcomings of insufficient samples during training process. The performance comparison between our proposed method with recent SISR methods shows that the former achieves a better tradeoff between perceptual quality and distortion measure than the latter. Extensive benchmark experiments and analyses also prove that our method provides a promising and opening architecture for SISR, which is not confined to a specific network model.
| S-EPMC7595386 | biostudies-literature
Project description:PURPOSE:Probe-based confocal laser endomicroscopy (pCLE) is a recent imaging modality that allows performing in vivo optical biopsies. The design of pCLE hardware, and its reliance on an optical fibre bundle, fundamentally limits the image quality with a few tens of thousands fibres, each acting as the equivalent of a single-pixel detector, assembled into a single fibre bundle. Video registration techniques can be used to estimate high-resolution (HR) images by exploiting the temporal information contained in a sequence of low-resolution (LR) images. However, the alignment of LR frames, required for the fusion, is computationally demanding and prone to artefacts. METHODS:In this work, we propose a novel synthetic data generation approach to train exemplar-based Deep Neural Networks (DNNs). HR pCLE images with enhanced quality are recovered by the models trained on pairs of estimated HR images (generated by the video registration algorithm) and realistic synthetic LR images. Performance of three different state-of-the-art DNNs techniques were analysed on a Smart Atlas database of 8806 images from 238 pCLE video sequences. The results were validated through an extensive image quality assessment that takes into account different quality scores, including a Mean Opinion Score (MOS). RESULTS:Results indicate that the proposed solution produces an effective improvement in the quality of the obtained reconstructed image. CONCLUSION:The proposed training strategy and associated DNNs allows us to perform convincing super-resolution of pCLE images.
| S-EPMC5973979 | biostudies-literature
Project description:Single-particle cryo-electron microscopy (cryo-EM) is a powerful imaging modality capable of visualizing proteins and macromolecular complexes at near-atomic resolution. The low electron-doses used to prevent radiation damage to the biological samples, however, result in images where the power of the noise is 100 times greater than the power of the signal. To overcome these low signal-to-noise ratios (SNRs), hundreds of thousands of particle projections are averaged to determine the three-dimensional structure of the molecule of interest. The sampling requirements of high-resolution imaging impose limitations on the pixel sizes that can be used for acquisition, limiting the size of the field of view and requiring data collection sessions of several days to accumulate sufficient numbers of particles. Meanwhile, recent image super-resolution (SR) techniques based on neural networks have shown state-of-the-art performance on natural images. Building on these advances, here, we present a multiple-image SR algorithm based on deep internal learning designed specifically to work under low-SNR conditions. Our approach leverages the internal image statistics of cryo-EM movies and does not require training on ground-truth data. When applied to single-particle datasets of apoferritin and T20S proteasome, we show that the resolution of the 3D structure obtained from SR micrographs can surpass the limits imposed by the imaging system. Our results indicate that the combination of low magnification imaging with in silico image SR has the potential to accelerate cryo-EM data collection by virtue of including more particles in each exposure and doing so without sacrificing resolution.
| S-EPMC10951919 | biostudies-literature
Project description:The disease spots on the grape leaves can be detected by using the image processing and deep learning methods. However, the accuracy and efficiency of the detection are still the challenges. The convolutional substrate information is fuzzy, and the detection results are not satisfactory if the disease spot is relatively small. In particular, the detection will be difficult if the number of pixels of the spot is <32 × 32 in the image. In order to effectively address this problem, we present a super-resolution image enhancement and convolutional neural network-based algorithm for the detection of black rot on grape leaves. First, the original image is up-sampled and enhanced with local details using the bilinear interpolation. As a result, the number of pixels in the image increase. Then, the enhanced images are fed into the proposed YOLOv3-SPP network for detection. In the proposed network, the IOU (Intersection Over Union, IOU) in the original YOLOv3 network is replaced with GIOU (Generalized Intersection Over Union, GIOU). In addition, we also add the SPP (Spatial Pyramid Pooling, SPP) module to improve the detection performance of the network. Finally, the official pre-trained weights of YOLOv3 are used for fast convergence. The test set test_pv from the Plant Village and the test set test_orchard from the orchard field were used to evaluate the network performance. The results of test_pv show that the grape leaf black rot is detected by the YOLOv3-SPP with 95.79% detection accuracy and 94.52% detector recall, which is a 5.94% greater in terms of accuracy and 10.67% greater in terms of recall as compared to the original YOLOv3. The results of test_orchard show that the method proposed in this paper can be applied in field environment with 86.69% detection precision and 82.27% detector recall, and the accuracy and recall were improved to 94.05 and 93.26% if the images with the simple background. Therefore, the detection method proposed in this work effectively solves the detection task of small targets and improves the detection effectiveness of the grape leaf black rot.
| S-EPMC8277438 | biostudies-literature
Project description:Point-scanning imaging systems are among the most widely used tools for high-resolution cellular and tissue imaging, benefiting from arbitrarily defined pixel sizes. The resolution, speed, sample preservation and signal-to-noise ratio (SNR) of point-scanning systems are difficult to optimize simultaneously. We show these limitations can be mitigated via the use of deep learning-based supersampling of undersampled images acquired on a point-scanning system, which we term point-scanning super-resolution (PSSR) imaging. We designed a 'crappifier' that computationally degrades high SNR, high-pixel resolution ground truth images to simulate low SNR, low-resolution counterparts for training PSSR models that can restore real-world undersampled images. For high spatiotemporal resolution fluorescence time-lapse data, we developed a 'multi-frame' PSSR approach that uses information in adjacent frames to improve model predictions. PSSR facilitates point-scanning image acquisition with otherwise unattainable resolution, speed and sensitivity. All the training data, models and code for PSSR are publicly available at 3DEM.org.
| S-EPMC8035334 | biostudies-literature
Project description:Background Cardiac MRI is limited by long acquisition times, yet faster acquisition of smaller-matrix images reduces spatial detail. Deep learning (DL) might enable both faster acquisition and higher spatial detail via super-resolution. Purpose To explore the feasibility of using DL to enhance spatial detail from small-matrix MRI acquisitions and evaluate its performance against that of conventional image upscaling methods. Materials and Methods Short-axis cine cardiac MRI examinations performed between January 2012 and December 2018 at one institution were retrospectively collected for algorithm development and testing. Convolutional neural networks (CNNs), a form of DL, were trained to perform super resolution in image space by using synthetically generated low-resolution data. There were 70%, 20%, and 10% of examinations allocated to training, validation, and test sets, respectively. CNNs were compared against bicubic interpolation and Fourier-based zero padding by calculating the structural similarity index (SSIM) between high-resolution ground truth and each upscaling method. Means and standard deviations of the SSIM were reported, and statistical significance was determined by using the Wilcoxon signed-rank test. For evaluation of clinical performance, left ventricular volumes were measured, and statistical significance was determined by using the paired Student t test. Results For CNN training and retrospective analysis, 400 MRI scans from 367 patients (mean age, 48 years ± 18; 214 men) were included. All CNNs outperformed zero padding and bicubic interpolation at upsampling factors from two to 64 (P < .001). CNNs outperformed zero padding on more than 99.2% of slices (9828 of 9907). In addition, 10 patients (mean age, 51 years ± 22; seven men) were prospectively recruited for super-resolution MRI. Super-resolved low-resolution images yielded left ventricular volumes comparable to those from full-resolution images (P > .05), and super-resolved full-resolution images appeared to further enhance anatomic detail. Conclusion Deep learning outperformed conventional upscaling methods and recovered high-frequency spatial information. Although training was performed only on short-axis cardiac MRI examinations, the proposed strategy appeared to improve quality in other imaging planes. © RSNA, 2020 Online supplemental material is available for this article.
| S-EPMC7263289 | biostudies-literature
Project description:Single-molecule localization microscopy (SMLM) can be used to resolve subcellular structures and achieve a tenfold improvement in spatial resolution compared to that obtained by conventional fluorescence microscopy. However, the separation of single-molecule fluorescence events that requires thousands of frames dramatically increases the image acquisition time and phototoxicity, impeding the observation of instantaneous intracellular dynamics. Here we develop a deep-learning based single-frame super-resolution microscopy (SFSRM) method which utilizes a subpixel edge map and a multicomponent optimization strategy to guide the neural network to reconstruct a super-resolution image from a single frame of a diffraction-limited image. Under a tolerable signal density and an affordable signal-to-noise ratio, SFSRM enables high-fidelity live-cell imaging with spatiotemporal resolutions of 30 nm and 10 ms, allowing for prolonged monitoring of subcellular dynamics such as interplays between mitochondria and endoplasmic reticulum, the vesicle transport along microtubules, and the endosome fusion and fission. Moreover, its adaptability to different microscopes and spectra makes it a useful tool for various imaging systems.
| S-EPMC10195829 | biostudies-literature
Project description:In this study, we address the problem of noisy image super-resolution. Noisy low resolution (LR) image is always obtained in applications, while most of the existing algorithms assume that the LR image is noise-free. As to this situation, we present an algorithm for noisy image super-resolution which can achieve simultaneously image super-resolution and denoising. And in the training stage of our method, LR example images are noise-free. For different input LR images, even if the noise variance varies, the dictionary pair does not need to be retrained. For the input LR image patch, the corresponding high resolution (HR) image patch is reconstructed through weighted average of similar HR example patches. To reduce computational cost, we use the atoms of learned sparse dictionary as the examples instead of original example patches. We proposed a distance penalty model for calculating the weight, which can complete a second selection on similar atoms at the same time. Moreover, LR example patches removed mean pixel value are also used to learn dictionary rather than just their gradient features. Based on this, we can reconstruct initial estimated HR image and denoised LR image. Combined with iterative back projection, the two reconstructed images are applied to obtain final estimated HR image. We validate our algorithm on natural images and compared with the previously reported algorithms. Experimental results show that our proposed method performs better noise robustness.
| S-EPMC5536359 | biostudies-literature
Project description:PurposeTo develop a super-resolution technique using convolutional neural networks for generating thin-slice knee MR images from thicker input slices, and compare this method with alternative through-plane interpolation methods.MethodsWe implemented a 3D convolutional neural network entitled DeepResolve to learn residual-based transformations between high-resolution thin-slice images and lower-resolution thick-slice images at the same center locations. DeepResolve was trained using 124 double echo in steady-state (DESS) data sets with 0.7-mm slice thickness and tested on 17 patients. Ground-truth images were compared with DeepResolve, clinically used tricubic interpolation, and Fourier interpolation methods, along with state-of-the-art single-image sparse-coding super-resolution. Comparisons were performed using structural similarity, peak SNR, and RMS error image quality metrics for a multitude of thin-slice downsampling factors. Two musculoskeletal radiologists ranked the 3 data sets and reviewed the diagnostic quality of the DeepResolve, tricubic interpolation, and ground-truth images for sharpness, contrast, artifacts, SNR, and overall diagnostic quality. Mann-Whitney U tests evaluated differences among the quantitative image metrics, reader scores, and rankings. Cohen's Kappa (κ) evaluated interreader reliability.ResultsDeepResolve had significantly better structural similarity, peak SNR, and RMS error than tricubic interpolation, Fourier interpolation, and sparse-coding super-resolution for all downsampling factors (p < .05, except 4 × and 8 × sparse-coding super-resolution downsampling factors). In the reader study, DeepResolve significantly outperformed (p < .01) tricubic interpolation in all image quality categories and overall image ranking. Both readers had substantial scoring agreement (κ = 0.73).ConclusionDeepResolve was capable of resolving high-resolution thin-slice knee MRI from lower-resolution thicker slices, achieving superior quantitative and qualitative diagnostic performance to both conventionally used and state-of-the-art methods.
| S-EPMC6107420 | biostudies-literature
Project description:We present deep-learning-enabled super-resolution across different fluorescence microscopy modalities. This data-driven approach does not require numerical modeling of the imaging process or the estimation of a point-spread-function, and is based on training a generative adversarial network (GAN) to transform diffraction-limited input images into super-resolved ones. Using this framework, we improve the resolution of wide-field images acquired with low-numerical-aperture objectives, matching the resolution that is acquired using high-numerical-aperture objectives. We also demonstrate cross-modality super-resolution, transforming confocal microscopy images to match the resolution acquired with a stimulated emission depletion (STED) microscope. We further demonstrate that total internal reflection fluorescence (TIRF) microscopy images of subcellular structures within cells and tissues can be transformed to match the results obtained with a TIRF-based structured illumination microscope. The deep network rapidly outputs these super-resolved images, without any iterations or parameter search, and could serve to democratize super-resolution imaging.
| S-EPMC7276094 | biostudies-literature