Browse
Submit Data
Databases
API
Help

Dataset Information

11 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete mitochondrial genome of Ladislavia taczanowskii (Cypriniformes: Gobionidae).

ABSTRACT: Mitochondrial genomes of two individuals of Tachanovsky's gudgeon Ladislavia taczanowskii have been determined on the basis of Sanger dideoxy sequencing. The gene compositions of two genomes contain 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and 1 control region with the same length 16,614 bp. The phylogenetic tree reveals that the monotypic genus Ladislavia is a sister group of the subfamily Gobioninae within the family Gobionidae.

SUBMITTER: An Q

PROVIDER: S-EPMC8330723 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Two complete mitochondrial genomes of Paraleucogobio fishes (Cypriniformes: Gobionidae).

Project description:Freshwater fishes in the genus Paraleucogobio include two species, Paraleucogobio notacanthus and Paraleucogobio strigatus. In this study, we determined complete mitochondrial genomes of P. notacanthus and P. strigatus to clarify their phylogenetic positions. The two mitochondrial genomes showed similar gene arrangements, codon use, gene overlaps or gene intervals with the length of 16,596?bp and 16,598?bp. Our phylogeny revealed that P. notacanthus and P. strigatus were nested within Gnathopogon fishes. The findings indicate that Paraleucogobio is a junior synonym of Gnathopogon.

| S-EPMC7687540 | biostudies-literature

Four complete mitochondrial genomes of Saurogobio fishes (Cypriniformes: Gobionidae).

Project description:In this study, we determined complete mitochondrial genomes of Saurogobio gracilicaudatus, S. xiangjiangensis, S. gymnocheilus, and S. lissilabris so that these data could contribute to reconstruct interspecific phylogenetic relationships within the genus Saurogobio. The four mitochondrial genomes showed A?+?T bias (55.2-57.0%) of base compositions with the length from 16,594 to 16,608?bp. Phylogenetic relationships among Saurogobio fishes and their close relatives showed that the genus Saurogobio was a monophyletic group and it could be divided into two major groups.

| S-EPMC7687549 | biostudies-literature

Three complete mitochondrial genomes of freshwater fishes in the genus Abbottina (Cypriniformes: Gobionidae).

Project description:Abbottina binhi has been misidentified as Abbottina rivularis in China for a long time. In this study, we determined three mitochondrial genomes of A. rivularis and A. binhi such that these data should contribute to molecular identifications of the two species. The size of new mitochondrial genomes was 16,609 or 16,599?bp with A?+?T bias of 55.7-56.5% in the base compositions. Our reconstructed phylogeny showed that A. rivularis and A. binhi formed a sister taxon relationship, and they together were a monophyletic group.

| S-EPMC7687625 | biostudies-literature

Three mitochondrial genomes of freshwater fishes in the genus Squalidus (Cypriniformes: Gobionidae).

Project description:Mitochondrial genomes of Squalidus mantschuricus, S. chankaensis, and S. longifilis have been determined using Sanger sequencing (GenBank Accession No. MT767745-MT767747). The three mitochondrial genomes consist of 13 protein-coding genes, two rRNA genes, 22 tRNA genes, and one control region with the length of 16,605, 16,611, and 16,607 bp. Phylogenetic analysis of the three species showed that S. mantschuricus is nested within a fully supported terminal clade with S. argentatus, and S. chankaensis is a sister group of S. mantschuricus, S. argentatus, and S. wolterstorffi. Squalidus longifilis is positioned in a clade with S. multimaculatus and S. gracilis.

| S-EPMC7703701 | biostudies-literature

Complete mitochondrial genome of Schizothorax davidi (Teleostei: Cypriniformes: Cyprinidae).

Project description:This study provides a mitochondrial complete genome of Schizothorax davidi. The complete genome is 16,576?bp in length with an A?+?T content of 54.9%, which contains 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes. The phylogenetic analysis indicated that S. davidi is closely related to Schizothorax lissolabiatus. These results contribute to explore the adaptation strategy of S. davidi on the conditions of Qinghai-Tibet Plateau.

| S-EPMC7707262 | biostudies-literature

Complete mitochondrial genome of Schizothorax gongshanensis (Cypriniformes: Cyprinidae).

Project description:In this study, the complete mitochondrial DNA of Schizothorax gongshanensis was determined. The complete genome is 16,591?bp in length which contains 13 protein-coding genes, 22 transfer RNA genes, 2 rRNA genes, an origin of light-strand replication (OL) and a control region (D-Loop). The complete mtDNA sequence of S. gongshanensis provides a useful genetic marker for the studies on molecular systematics, population genetics and stock assessment.

| S-EPMC7800125 | biostudies-literature

Complete mitochondrial genome of Vanmanenia hainanensis (Cypriniformes: Gastromyzontidae).

Project description:Vanmanenia hainanensis Chen & Zheng 1980 is endemic to Hainan Island, China. The complete mitogenome of the species was sequenced in this study. It was 16,555 bp in length, containing 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes, and 1 control region. The base composition was 29.5% A, 25.4% T, 16.7% G, and 28.4% C. All genes were encoded on the H-strand except for ND6 and 8 tRNA genes, located on the l-strand. Phylogenetic analysis based on 13 protein-coding genes indicated that the genus Vanmanenia did not form monophyly and it had the closest relationship with Formosania. This study aimed at providing useful genetic information for future studies on taxonomy, phylogeny, and evolution of Vanmanenia species.

| S-EPMC8128221 | biostudies-literature

The complete mitochondrial genome of Ancherythroculter kurematsui (Cypriniformes: Cyprinidae).

Project description:Ancherythroculter kurematsui (A. kurematsui) is a unique small-size freshwater fish in southwest China. In this study, the complete mitochondrial genome of A. kurematsui was determined (GenBank accession number is KU234534). The mitochondrial genome sequence of A. kurematsui was a circular molecule with 16,621?bp in length, and contained 37 typical animal mitochondrial genes including 2 ribosomal RNA genes, 13 protein-coding genes, 22 transfer RNA genes and a control region (D-loop). Four nucleotide compositions and their relative proportions of the entire mitogenome was 27.69% C, 16.16% G, 31.21% A and 24.93% T, with an A?+?T and G?+?C contents being 56.14% and 43.86%, respectively.

| S-EPMC7800160 | biostudies-literature

The complete mitochondrial genome of Shizothorax grahami (Cypriniformes: Cyprinidae).

Project description:Shizothorax grahami (S. grahami) is an underlying economic cold-freshwater fish in southwest China. In this study, the complete mitochondrial genome of S. grahami was determined (GenBank accession number is NC_029708). The mitochondrial genome sequence of S. grahami was a circular molecule with 16,584?bp in length, and contained 37 typical animal mitochondrial genes including 2 ribosomal RNA genes, 13 protein-coding genes, 22 transfer RNA genes and a control region (D-loop). Four nucleotide compositions and their relative proportions of the entire mitogenome was 27.14% C, 19.93% G, 29.58% A and 25.34% T. Among most species of genus Shizothorax, Schizothorax davidi had the closest relationship with S. grahami, and then Schizothorax prenanti.

| S-EPMC7800967 | biostudies-literature

The complete mitochondrial genome of Neolissochilus benasi (Cypriniformes: Cyprinidae).

Project description:In this study, the complete mitochondrial genome of Neolissochilus benasi has been determined by polymerase chain reaction method for the first time. The overall base composition of N. benasi mitogenome is 31.8% for A, 27.4% for C, 15.9% for G and 25.0% for T. The percentage of G + C content is 41.3%. The mitogenome is a circular DNA molecule of 16 583 bp in length with a D-loop region and contains 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes and 13 protein-coding genes. The mitochondrial genome sequencing for N. benasi in this study provides important molecular data for further evolutionary analysis for Cyprinoidea.

| S-EPMC7748629 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data