Browse
Submit Data
Databases
API
Help

Dataset Information

15 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The mitochondrial genome of Calohilara tibetensis Ding, He, Lin, and Yang, 2020 (Diptera: Empididae).

ABSTRACT: The dance fly Calohilara tibetensis Ding, He, Lin and Yang, 2020 belongs to the subfamily Empidinae of Empididae. The mitochondrial genome of C. tibetensis was sequenced as the new representative of the subfamily Empidinae. The nearly complete mitogenome was 15,354 bp, consisting of 13 protein-coding genes, two rRNAs, and 22 tRNAs. All genes have the similar locations and strands with that of other published species of Empididae. The nucleotide composition biases toward A and T is 77.4% of the entirety. All PCGs start with ATN codons except COI and NAD1, and end with TAA or incomplete stop codon. Bayesian inference (BI) analysis strongly supported the monophyly of both Empididae and Dolichopodidae and the monophyly of subfamily Empidinae. It suggested that Calohilara is the sister group of Hilara.

SUBMITTER: Lin C

PROVIDER: S-EPMC8366656 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

The mitochondrial genome of Xanthochlorus tibetensis (Diptera: Dolichopodidae).

Project description:The long-legged fly Xanthochlorus tibetensis belongs to the subfamily Xanthochlorinae of Dolichopodidae. The mitogenome of X. tibetensis was sequenced, it is the first representative complete mitogenome from this subfamily. This mitogenome is 15,580 bp in size, includes 13 protein-coding genes, 22 transfer RNAs, and two ribosomal RNAs. All genes have the same location and coding strand as in other published species of Dolichopodidae. Nucleotide composition is biased toward A and T, which together made up 77.6% of the entire genome. Bayesian inference strongly supported the monophyly of Empidoidea, Empididae and Dolichopodidae, with the phylogenetic relationships within Empidoidea: ((Dolichopodinae + Xanthochlorinae) + Neurigoninae) + ((Trichopezinae + (Empidinae + Oreogetoninae)) + Ocydromiinae).

| S-EPMC7889179 | biostudies-literature

The mitochondrial genome of Empis separata (Diptera: Empididae).

Project description:The dance fly Empis separata belongs to the subfamily Empidinae of Empididae. The mitogenome (GenBank accession number: MK993569) of E. separata was sequenced, the new representative of the mitogenome of the subfamily. The complete mitogenome is 14,961 bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Empididae. The nucleotide composition biases toward A and T, which together made up 76.3% of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae, and Dolichopodidae. This result also suggested that Empidinae is the sister group to the clade of Trichopezinae.

| S-EPMC7706915 | biostudies-literature

The mitochondrial genome of Hilara sp. (Diptera: Empididae).

Project description:The dance fly Hilara sp. belongs to the subfamily Empidinae of Empididae. The mitogenome (GenBank accession number: MN064659) of Hilara sp. was sequenced, the new representative of the mitogenome of the subfamily. The nearly complete mitogenome is 14,927 bp totally, consisting of 13 protein-coding genes, 2 rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Empididae. The nucleotide composition biases towards A and T, which together made up 75.7％of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae, and Dolichopodidae. It is clear that the phylogenetic relationship within Empidoidea: Dolichopodinae was the sister group to Neurigoninae, and Empidinae was the sister group to Trichopezinae, and the clade that contains Dolichopodinae and Neurigoninae was assigned to the sister group to the clade that contains Empidinae and Trichopezinae.

| S-EPMC7706997 | biostudies-literature

The mitochondrial genome of Oreogeton sp. (Diptera: Empididae).

Project description:The dance fly Oreogeton sp. belongs to the subfamily Oreogetoninae of Empididae. The mitogenome of Oreogeton sp. (GenBank accession number: MK639348) was sequenced, the first representative of the mitogenome of the subfamily. The nearly complete mitogenome is 15,718 bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Empididae. The nucleotide composition biases toward A and T, which together made up 77.2％of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae, and Dolichopodidae. This result also suggested that Oreogetoninae was assigned to the sister group to the clade that consists of Trichopezinae and Clinocerinae, and then Empidinae is the sister to the clade that contains Oreogetoninae, Trichopezinae, and Clinocerinae.

| S-EPMC7687517 | biostudies-literature

The mitochondrial genome of Chelipoda sp. (Diptera: Empididae).

Project description:The dance fly Chelipoda sp. belongs to the subfamily Hemerodromiinae of Empididae. The mitogenome (GenBank accession number: MT396991) of Chelipoda sp. was sequenced, the first representative of the mitogenome of the subfamily. The nearly complete mitogenome is 14,976 bp totally, consisting of 13 protein-coding genes, 2 rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands compared with that of other published species of Empididae. The nucleotide composition biases toward A and T, which together made up 77.2％of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae and Dolichopodidae. The phylogenetic relationship within Empidoidea is as follows: (Dolichopodinae + Neurigoninae) + (((Empidinae + Hemerodromiinae) + (Trichopezinae + Oreogetoninae)) + Ocydromiinae) in this study.

| S-EPMC7510568 | biostudies-literature

The mitochondrial genome of Anthalia sp. (Diptera: Empididae).

Project description:The dance fly Anthalia sp. belongs to the subfamily Ocydromiinae of Empididae. The mitogenome (GenBank accession number: MT483943) of Anthalia sp. was sequenced, the new representative of the mitogenome of the subfamily. The nearly complete mitogenome is 15,142 bp totally, consisting of 13 protein-coding genes, 2 rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Empididae. The nucleotide composition biases toward A and T, which together made up 78.6% of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae, and Dolichopodidae. It is clear that the phylogenetic relationship within Empidoidea: (Dolichopodinae + Neurigoninae) + ((Empidinae + (Trichopezinae + Oreogetoninae)) + Ocydromiinae) in this study.

| S-EPMC7782628 | biostudies-literature

The mitochondrial genome of Leptopeza flavipes (Diptera: Empididae).

Project description:The dance fly Leptopeza flavipes belongs to the subfamily Ocydromiinae of Empididae. The mitogenome (GenBank accession number: MT610901) of L. flavipes was sequenced, the new representative of the mitogenome of the subfamily. The nearly complete mitogenome is 15,267 bp totally, consisting of 13 protein-coding genes, 2 rRNAs and 22 transfer RNAs. All genes have similar locations and strands with that of other published species of Empididae. The nucleotide composition biases toward A and T, which together made up 78.1％of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae and Dolichopodidae. It is clear that the phylogenetic relationship within Empidoidea: (Dolichopodinae + Neurigoninae) + ((Empidinae + (Trichopezinae + Oreogetoninae)) + Ocydromiinae) in this study.

| S-EPMC7782736 | biostudies-literature

The complete mitochondrial genome of Hybos grossipes (Linnaeus, 1767) (Diptera: Empididae).

Project description:The genus Hybos Meigen, 1803 belongs to the subfamily Hybotinae of the family Empididae. Here we report a mitogenome of Hybos grossipes (Linnaeus, 1767) as the new representative of the subfamily Hybotinae. The complete mitogenome is 16,325 bp in total, consisting of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and a control region. The nucleotide composition is biased toward A and T, accounting for 77.2% of the total. All PCGs start with ATN codons except COI, NAD1, and NAD5, and end with TAA or incomplete stop codon T. The phylogenetic result generated by IQ-Tree based on 13 PGCs showed that the subfamily Hybotinae is monophyletic, and the subfamily Hybotinae is a sister group of the subfamily Ocydromiinae.

| S-EPMC9635459 | biostudies-literature

The mitochondrial genome of Lichtwardtia dentalis Zhang, Masunaga et Yang, 2009 (Diptera: Dolichopodidae).

Project description:The long-legged fly Lichtwardtia dentalis Zhang, Masunaga et Yang, 2009 belongs to the subfamily Dolichopodinae of Dolichopodidae. The newly sequenced mitogenome of L. dentalis is a new representative of the subfamily. The nearly complete mitogenome is 15,124 bp in length, consisting of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes (rRNAs), and 22 transfer RNA genes (tRNAs). All genes have similar locations and encoding directions with that of other published mitogenomes of Dolichopodidae. The nucleotide composition biases toward A and T with the overall A + T % is 73.9%. All protein-coding genes initiate with standard start codon ATN except COI and NAD1, and TAA/TAG are conventionally used as stop codons. All tRNAs, ranging from 62 to 71 bp, have a clover-leaf structure. Based on the result of the phylogenetic analysis, Dolichopodidae and Empididae were monophyletic, and the relationships among subfamilies of Dolichopodidae were Diaphorinae + (Peloropeodinae + (Xanthochlorinae + (Medeterinae + Dolichopodinae))). The monophyly of the subfamily Dolichopodinae and the sister relationship between Dolichopus and Lichtwardtia were also strongly supported.

| S-EPMC8266247 | biostudies-literature

Redescription of Arcifronsarcifrontalis Ding & Yang, 1986 (Hemiptera, Fulgoromorpha, Delphacidae).

Project description:The male of Arcifronsarcifrontalis Ding & Yang, 1986 (Hemiptera, Fulgoroidea, Delphacidae, Tropidocephalini) is redescribed. The female genitalia of the species here, is described and illustrated for the first time. The geographic distribution of the species and images of adult habitus are provided.

| S-EPMC6403198 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data