Browse
Submit Data
Databases
API
Help

Dataset Information

15 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The mitochondrial genome of Anthalia sp. (Diptera: Empididae).

ABSTRACT: The dance fly Anthalia sp. belongs to the subfamily Ocydromiinae of Empididae. The mitogenome (GenBank accession number: MT483943) of Anthalia sp. was sequenced, the new representative of the mitogenome of the subfamily. The nearly complete mitogenome is 15,142 bp totally, consisting of 13 protein-coding genes, 2 rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Empididae. The nucleotide composition biases toward A and T, which together made up 78.6% of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae, and Dolichopodidae. It is clear that the phylogenetic relationship within Empidoidea: (Dolichopodinae + Neurigoninae) + ((Empidinae + (Trichopezinae + Oreogetoninae)) + Ocydromiinae) in this study.

SUBMITTER: Zhao C

PROVIDER: S-EPMC7782628 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

The mitochondrial genome of Hilara sp. (Diptera: Empididae).

Project description:The dance fly Hilara sp. belongs to the subfamily Empidinae of Empididae. The mitogenome (GenBank accession number: MN064659) of Hilara sp. was sequenced, the new representative of the mitogenome of the subfamily. The nearly complete mitogenome is 14,927 bp totally, consisting of 13 protein-coding genes, 2 rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Empididae. The nucleotide composition biases towards A and T, which together made up 75.7％of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae, and Dolichopodidae. It is clear that the phylogenetic relationship within Empidoidea: Dolichopodinae was the sister group to Neurigoninae, and Empidinae was the sister group to Trichopezinae, and the clade that contains Dolichopodinae and Neurigoninae was assigned to the sister group to the clade that contains Empidinae and Trichopezinae.

| S-EPMC7706997 | biostudies-literature

The mitochondrial genome of Oreogeton sp. (Diptera: Empididae).

Project description:The dance fly Oreogeton sp. belongs to the subfamily Oreogetoninae of Empididae. The mitogenome of Oreogeton sp. (GenBank accession number: MK639348) was sequenced, the first representative of the mitogenome of the subfamily. The nearly complete mitogenome is 15,718 bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Empididae. The nucleotide composition biases toward A and T, which together made up 77.2％of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae, and Dolichopodidae. This result also suggested that Oreogetoninae was assigned to the sister group to the clade that consists of Trichopezinae and Clinocerinae, and then Empidinae is the sister to the clade that contains Oreogetoninae, Trichopezinae, and Clinocerinae.

| S-EPMC7687517 | biostudies-literature

The mitochondrial genome of Chelipoda sp. (Diptera: Empididae).

Project description:The dance fly Chelipoda sp. belongs to the subfamily Hemerodromiinae of Empididae. The mitogenome (GenBank accession number: MT396991) of Chelipoda sp. was sequenced, the first representative of the mitogenome of the subfamily. The nearly complete mitogenome is 14,976 bp totally, consisting of 13 protein-coding genes, 2 rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands compared with that of other published species of Empididae. The nucleotide composition biases toward A and T, which together made up 77.2％of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae and Dolichopodidae. The phylogenetic relationship within Empidoidea is as follows: (Dolichopodinae + Neurigoninae) + (((Empidinae + Hemerodromiinae) + (Trichopezinae + Oreogetoninae)) + Ocydromiinae) in this study.

| S-EPMC7510568 | biostudies-literature

The mitochondrial genome of Empis separata (Diptera: Empididae).

Project description:The dance fly Empis separata belongs to the subfamily Empidinae of Empididae. The mitogenome (GenBank accession number: MK993569) of E. separata was sequenced, the new representative of the mitogenome of the subfamily. The complete mitogenome is 14,961 bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Empididae. The nucleotide composition biases toward A and T, which together made up 76.3% of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae, and Dolichopodidae. This result also suggested that Empidinae is the sister group to the clade of Trichopezinae.

| S-EPMC7706915 | biostudies-literature

The mitochondrial genome of Leptopeza flavipes (Diptera: Empididae).

Project description:The dance fly Leptopeza flavipes belongs to the subfamily Ocydromiinae of Empididae. The mitogenome (GenBank accession number: MT610901) of L. flavipes was sequenced, the new representative of the mitogenome of the subfamily. The nearly complete mitogenome is 15,267 bp totally, consisting of 13 protein-coding genes, 2 rRNAs and 22 transfer RNAs. All genes have similar locations and strands with that of other published species of Empididae. The nucleotide composition biases toward A and T, which together made up 78.1％of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae and Dolichopodidae. It is clear that the phylogenetic relationship within Empidoidea: (Dolichopodinae + Neurigoninae) + ((Empidinae + (Trichopezinae + Oreogetoninae)) + Ocydromiinae) in this study.

| S-EPMC7782736 | biostudies-literature

The complete mitochondrial genome of Hybos grossipes (Linnaeus, 1767) (Diptera: Empididae).

Project description:The genus Hybos Meigen, 1803 belongs to the subfamily Hybotinae of the family Empididae. Here we report a mitogenome of Hybos grossipes (Linnaeus, 1767) as the new representative of the subfamily Hybotinae. The complete mitogenome is 16,325 bp in total, consisting of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and a control region. The nucleotide composition is biased toward A and T, accounting for 77.2% of the total. All PCGs start with ATN codons except COI, NAD1, and NAD5, and end with TAA or incomplete stop codon T. The phylogenetic result generated by IQ-Tree based on 13 PGCs showed that the subfamily Hybotinae is monophyletic, and the subfamily Hybotinae is a sister group of the subfamily Ocydromiinae.

| S-EPMC9635459 | biostudies-literature

The mitochondrial genome of Calohilara tibetensis Ding, He, Lin, and Yang, 2020 (Diptera: Empididae).

Project description:The dance fly Calohilara tibetensis Ding, He, Lin and Yang, 2020 belongs to the subfamily Empidinae of Empididae. The mitochondrial genome of C. tibetensis was sequenced as the new representative of the subfamily Empidinae. The nearly complete mitogenome was 15,354 bp, consisting of 13 protein-coding genes, two rRNAs, and 22 tRNAs. All genes have the similar locations and strands with that of other published species of Empididae. The nucleotide composition biases toward A and T is 77.4% of the entirety. All PCGs start with ATN codons except COI and NAD1, and end with TAA or incomplete stop codon. Bayesian inference (BI) analysis strongly supported the monophyly of both Empididae and Dolichopodidae and the monophyly of subfamily Empidinae. It suggested that Calohilara is the sister group of Hilara.

| S-EPMC8366656 | biostudies-literature

The mitochondrial genome of Suillia sp. (Diptera: Heleomyzidae).

Project description:The mitogenome of Suillia sp. was sequenced as the first representative of the family Heleomyzidae. The mitogenome is 15,660?bp totally, consisting of 13 protein-coding genes, 2 rRNAs, and 22 transfer RNAs. The nucleotide composition biases toward A and T is 75.1? of the entirety. All PCGs start with ATN codons except COI and ND1 and end with TAA or incomplete stop codon. Phylogenetic analyses based on 9 dipteran species supported the relationship of Opomyzoidea + (Ephydroidea + (Lauxanioidea + (Sciomyzoidea + (Sphaeroceroidea?+?Tephritoidea)))).

| S-EPMC7706466 | biostudies-literature

The mitochondrial genome of Medetera sp. (Diptera: Dolichopodidae).

Project description:The long-legged fly Medetera sp. (Genbank accession number: MN604695) belongs to the subfamily Medeterinae of Dolichopodidae. The mitogenome of Medetera sp. was sequenced, the first representative of the mitogenome of the subfamily. The mitogenome is 14,740 bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs. All genes have similar locations and strands with that of other published species of Dolichopodidae. The nucleotide composition biases toward A and T, which together made up 67.6％ of the entirety. Bayesian inference analysis strongly supported the monophyly of Dolichopodidae. It suggested that subfamily Medeterinae is the sister group of subfamily Rhaphiinae.

| S-EPMC7720944 | biostudies-literature

The mitochondrial genome of Formicosepsis sp. (Diptera: Cypselosomatidae).

Project description:The mitochondrial genome of Formicosepsis sp. was sequenced and annotated as the first representative of family Cypselosomatidae and superfamily Nerioidea. The part mitochondrial genome of Formicosepsis sp. is 15,144 bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs, which has a similar gene structure with other published species of Diptera. The nucleotide composition biases toward A and T is 76.4% of the entirety. IQ-tree analysis revealed that the outgroups Anopheles oryzalimnetes and Simulium variegatum diverged from the rest. The Nerioidea represented by Formicosepsis sp. was sister group to Opomyzoidea. The Sciomyzoidea consisting of Sciomyzidae and Sepsidae is a monophyletic clade at the base of Acalyptratae.

| S-EPMC7687536 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data