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Planned missing data designs and methods: Options for strengthening inference, increasing research efficiency and improving animal welfare in ecological and evolutionary research.

ABSTRACT: Ecological and evolutionary research questions are increasingly requiring the integration of research fields along with larger data sets to address fundamental local- and global-scale problems. Unfortunately, these agendas are often in conflict with limited funding and a need to balance animal welfare concerns. Planned missing data design (PMDD), where data are randomly and deliberately missed during data collection, combined with missing data procedures, can be useful tools when working under greater research constraints. Here, we review how PMDD can be incorporated into existing experimental designs by discussing alternative design approaches and demonstrate with simulated data sets how missing data procedures work with incomplete data. PMDDs can provide researchers with a unique toolkit that can be applied during the experimental design stage. Planning and thinking about missing data early can (1) reduce research costs by allowing for the collection of less expensive measurement variables; (2) provide opportunities to distinguish predictions from alternative hypotheses by allowing more measurement variables to be collected; and (3) minimize distress caused by experimentation by reducing the reliance on invasive procedures or allowing data to be collected on fewer subjects (or less often on a given subject). PMDDs and missing data methods can even provide statistical benefits under certain situations by improving statistical power relative to a complete case design. The impacts of unplanned missing data, which can cause biases in parameter estimates and their uncertainty, can also be ameliorated using missing data procedures. PMDDs are still in their infancy. We discuss some of the difficulties in their implementation and provide tentative solutions. While PMDDs may not always be the best option, missing data procedures are becoming more sophisticated and more easily implemented and it is likely that PMDDs will be effective tools for a wide range of experimental designs, data types and problems in ecology and evolution.

SUBMITTER: Noble DWA

PROVIDER: S-EPMC8372070 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Project description:BackgroundThe US faces remarkable food and nutrition challenges. A new federal effort to strengthen and coordinate nutrition research could rapidly generate the evidence base needed to address these multiple national challenges. However, the relevant characteristics of such an effort have been uncertain.ObjectivesOur aim was to provide an objective, informative summary of 1) the mounting diet-related health burdens facing our nation and corresponding economic, health equity, national security, and sustainability implications; 2) the current federal nutrition research landscape and existing mechanisms for its coordination; 3) the opportunities for and potential impact of new fundamental, clinical, public health, food and agricultural, and translational scientific discoveries; and 4) the various options for further strengthening and coordinating federal nutrition research, including corresponding advantages, disadvantages, and potential executive and legislative considerations.MethodsWe reviewed government and other published documents on federal nutrition research; held various discussions with expert groups, advocacy organizations, and scientific societies; and held in-person or phone meetings with >50 federal staff in executive and legislative roles, as well as with a variety of other stakeholders in academic, industry, and nongovernment organizations.ResultsStark national nutrition challenges were identified. More Americans are sick than are healthy, largely from rising diet-related illnesses. These conditions create tremendous strains on productivity, health care costs, health disparities, government budgets, US economic competitiveness, and military readiness. The coronavirus disease 2019 (COVID-19) outbreak has further laid bare these strains, including food insecurity, major diet-related comorbidities for poor outcomes from COVID-19 such as diabetes, hypertension, and obesity, and insufficient surveillance on and coordination of our food system. More than 10 federal departments and agencies currently invest in critical nutrition research, yet with relatively flat investments over several decades. Coordination also remains suboptimal, documented by multiple governmental reports over 50 years. Greater harmonization and expansion of federal investment in nutrition science, not a silo-ing or rearrangement of existing investments, has tremendous potential to generate new discoveries to improve and sustain the health of all Americans. Two identified key strategies to achieve this were as follows: 1) a new authority for robust cross-governmental coordination of nutrition research and other nutrition-related policy and 2) strengthened authority, investment, and coordination for nutrition research within the NIH. These strategies were found to be complementary, together catalyzing important new science, partnerships, coordination, and returns on investment. Additional complementary actions to accelerate federal nutrition research were identified at the USDA.ConclusionsThe need and opportunities for strengthened federal nutrition research are clear, with specific identified options to help create the new leadership, strategic planning, coordination, and investment the nation requires to address the multiple nutrition-related challenges and grasp the opportunities before us.

Project description:BackgroundEcological replacement involves the introduction of non-native species to habitats beyond their historical range, a factor identified as increasing the risk of failure for translocations. Yet the effectiveness and success of ecological replacement rely in part on the ability of translocatees to adapt, survive and potentially reproduce in a novel environment. We discuss the welfare aspects of translocating captive-reared non-native tortoises, Aldabrachelys gigantea and Astrochelys radiata, to two offshore Mauritian islands, and the costs and success of the projects to date.Methodology/principal findingsBecause tortoises are long-lived, late-maturing reptiles, we assessed the progress of the translocation by monitoring the survival, health, growth, and breeding by the founders. Between 2000 and 2011, a total of 26 A. gigantea were introduced to Ile aux Aigrettes, and in 2007 twelve sexually immature A. gigantea and twelve male A. radiata were introduced to Round Island, Mauritius. Annual mortality rates were low, with most animals either maintaining or gaining weight. A minimum of 529 hatchlings were produced on Ile aux Aigrettes in 11 years; there was no potential for breeding on Round Island. Project costs were low. We attribute the success of these introductions to the tortoises' generalist diet, habitat requirements, and innate behaviour.Conclusions/significanceFeasibility analyses for ecological replacement and assisted colonisation projects should consider the candidate species' welfare during translocation and in its recipient environment. Our study provides a useful model for how this should be done. In addition to serving as ecological replacements for extinct Mauritian tortoises, we found that releasing small numbers of captive-reared A. gigantea and A. radiata is cost-effective and successful in the short term. The ability to release small numbers of animals is a particularly important attribute for ecological replacement projects since it reduces the potential risk and controversy associated with introducing non-native species.

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Planned missing data designs and methods: Options for strengthening inference, increasing research efficiency and improving animal welfare in ecological and evolutionary research.

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