Dataset Information

Segmentation of prostate and prostate zones using deep learning : A multi-MRI vendor analysis.

ABSTRACT:

Purpose

Develop a deep-learning-based segmentation algorithm for prostate and its peripheral zone (PZ) that is reliable across multiple MRI vendors.

Methods

This is a retrospective study. The dataset consisted of 550 MRIs (Siemens-330, General Electric[GE]-220). A multistream 3D convolutional neural network is used for automatic segmentation of the prostate and its PZ using T2-weighted (T2-w) MRI. Prostate and PZ were manually contoured on axial T2‑w. The network uses axial, coronal, and sagittal T2‑w series as input. The preprocessing of the input data includes bias correction, resampling, and image normalization. A dataset from two MRI vendors (Siemens and GE) is used to test the proposed network. Six different models were trained, three for the prostate and three for the PZ. Of the three, two were trained on data from each vendor separately, and a third (Combined) on the aggregate of the datasets. The Dice coefficient (DSC) is used to compare the manual and predicted segmentation.

Results

For prostate segmentation, the Combined model obtained DSCs of 0.893 ± 0.036 and 0.825 ± 0.112 (mean ± standard deviation) on Siemens and GE, respectively. For PZ, the best DSCs were from the Combined model: 0.811 ± 0.079 and 0.788 ± 0.093. While the Siemens model underperformed on the GE dataset and vice versa, the Combined model achieved robust performance on both datasets.

Conclusion

The proposed network has a performance comparable to the interexpert variability for segmenting the prostate and its PZ. Combining images from different MRI vendors on the training of the network is of paramount importance for building a universal model for prostate and PZ segmentation.

SUBMITTER: Zavala-Romero O

PROVIDER: S-EPMC8418872 | biostudies-literature | 2020 Oct

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Segmentation of prostate and prostate zones using deep learning : A multi-MRI vendor analysis.

Zavala-Romero Olmo O Breto Adrian L AL Xu Isaac R IR Chang Yu-Cherng C YC Gautney Nicole N Dal Pra Alan A Abramowitz Matthew C MC Pollack Alan A Stoyanova Radka R

Strahlentherapie und Onkologie : Organ der Deutschen Rontgengesellschaft ... [et al] 20200327 10

<h4>Purpose</h4>Develop a deep-learning-based segmentation algorithm for prostate and its peripheral zone (PZ) that is reliable across multiple MRI vendors.<h4>Methods</h4>This is a retrospective study. The dataset consisted of 550 MRIs (Siemens-330, General Electric[GE]-220). A multistream 3D convolutional neural network is used for automatic segmentation of the prostate and its PZ using T2-weighted (T2-w) MRI. Prostate and PZ were manually contoured on axial T2‑w. The network uses axial, coron ...[more]

PMID: 32221622

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Dataset Information

Segmentation of prostate and prostate zones using deep learning : A multi-MRI vendor analysis.

Purpose

Methods

Results

Conclusion

Publications

Segmentation of prostate and prostate zones using deep learning : A multi-MRI vendor analysis.

Similar Datasets

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