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Hierarchical organization of cortical and thalamic connectivity.


ABSTRACT: The mammalian cortex is a laminar structure containing many areas and cell types that are densely interconnected in complex ways, and for which generalizable principles of organization remain mostly unknown. Here we describe a major expansion of the Allen Mouse Brain Connectivity Atlas resource1, involving around a thousand new tracer experiments in the cortex and its main satellite structure, the thalamus. We used Cre driver lines (mice expressing Cre recombinase) to comprehensively and selectively label brain-wide connections by layer and class of projection neuron. Through observations of axon termination patterns, we have derived a set of generalized anatomical rules to describe corticocortical, thalamocortical and corticothalamic projections. We have built a model to assign connection patterns between areas as either feedforward or feedback, and generated testable predictions of hierarchical positions for individual cortical and thalamic areas and for cortical network modules. Our results show that cell-class-specific connections are organized in a shallow hierarchy within the mouse corticothalamic network.

SUBMITTER: Harris JA 

PROVIDER: S-EPMC8433044 | biostudies-literature | 2019 Nov

REPOSITORIES: biostudies-literature

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Hierarchical organization of cortical and thalamic connectivity.

Harris Julie A JA   Mihalas Stefan S   Hirokawa Karla E KE   Whitesell Jennifer D JD   Choi Hannah H   Bernard Amy A   Bohn Phillip P   Caldejon Shiella S   Casal Linzy L   Cho Andrew A   Feiner Aaron A   Feng David D   Gaudreault Nathalie N   Gerfen Charles R CR   Graddis Nile N   Groblewski Peter A PA   Henry Alex M AM   Ho Anh A   Howard Robert R   Knox Joseph E JE   Kuan Leonard L   Kuang Xiuli X   Lecoq Jerome J   Lesnar Phil P   Li Yaoyao Y   Luviano Jennifer J   McConoughey Stephen S   Mortrud Marty T MT   Naeemi Maitham M   Ng Lydia L   Oh Seung Wook SW   Ouellette Benjamin B   Shen Elise E   Sorensen Staci A SA   Wakeman Wayne W   Wang Quanxin Q   Wang Yun Y   Williford Ali A   Phillips John W JW   Jones Allan R AR   Koch Christof C   Zeng Hongkui H  

Nature 20191030 7781


The mammalian cortex is a laminar structure containing many areas and cell types that are densely interconnected in complex ways, and for which generalizable principles of organization remain mostly unknown. Here we describe a major expansion of the Allen Mouse Brain Connectivity Atlas resource<sup>1</sup>, involving around a thousand new tracer experiments in the cortex and its main satellite structure, the thalamus. We used Cre driver lines (mice expressing Cre recombinase) to comprehensively  ...[more]

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