Browse
Submit Data
Databases
API
Help

Dataset Information

20 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Current contrasting population trends among North American hummingbirds.

ABSTRACT: As pollinators, hummingbirds play a critical role for both the function of ecological communities and in providing ecosystem services for people. To examine the conservation status of North American hummingbirds, we analyzed Breeding Bird Survey data for 8 species and 3 genera from 1970 to 2019 (long-term) and from 2009 to 2019 (short-term, approximately three generations). Among the Selasphorus genus, Allen's, rufous, and broad-tailed hummingbirds have declined since 1970, and the rate of decline increased from 2009 to 2019. Contrasting the trends from the past half-century, ruby-throated hummingbirds of Eastern North America have declined since approximately 2004 throughout most of the species' breeding range. In contrast, Anna's hummingbird populations have increased dramatically since 1970 in their range in western North America. We also tested whether apparent declines might be due to a growing mismatch between the timing of breeding and the timing of BBS surveys. We found no evidence for such an effect, thus supporting the hypothesis that trends reflect true demographic change. Our analyses and geographic modelling highlight the urgent need of regulatory action to conserve hummingbirds uniquely capable of filling their niche in North America.

SUBMITTER: English SG

PROVIDER: S-EPMC8443710 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Collision mortality has no discernible effect on population trends of North American birds.

Project description:Avian biodiversity is threatened by numerous anthropogenic factors and migratory species are especially at risk. Migrating birds frequently collide with manmade structures and such losses are believed to represent the majority of anthropogenic mortality for North American birds. However, estimates of total collision mortality range across several orders of magnitude and effects on population dynamics remain unknown. Herein, we develop a novel method to assess relative vulnerability to anthropogenic threats, which we demonstrate using 243,103 collision records from 188 species of eastern North American landbirds. After correcting mortality estimates for variation attributable to population size and geographic overlap with potential collision structures, we found that per capita vulnerability to collision with buildings and towers varied over more than four orders of magnitude among species. Species that migrate long distances or at night were much more likely to be killed by collisions than year-round residents or diurnal migrants. However, there was no correlation between relative collision mortality and long-term population trends for these same species. Thus, although millions of North American birds are killed annually by collisions with manmade structures, this source of mortality has no discernible effect on populations.

| S-EPMC3170378 | biostudies-literature

Population genomics of North American common ragweed

Project description:Characterization of diallelic SNP loci via a reduced-representation Genotyping-by-Sequencing (GBS) approach, to investigate fine-scale population genetic structure across the native range of Ambrosia artemisiifolia L.

| PRJEB13190 | ENA

Genotyping by sequencing reveals contrasting patterns of population structure, ecologically mediated divergence, and long-distance dispersal in North American palms.

Project description:Comparative studies can provide powerful insights into processes that affect population divergence and thereby help to elucidate the mechanisms by which contemporary populations may respond to environmental change. Furthermore, approaches such as genotyping by sequencing (GBS) provide unprecedented power for resolving genetic differences among species and populations. We therefore used GBS to provide a genomewide perspective on the comparative population structure of two palm genera, Washingtonia and Brahea, on the Baja California peninsula, a region of high landscape and ecological complexity. First, we used phylogenetic analysis to address taxonomic uncertainties among five currently recognized species. We resolved three main clades, the first corresponding to W. robusta and W. filifera, the second to B. brandegeei and B. armata, and the third to B. edulis from Guadalupe Island. Focusing on the first two clades, we then delved deeper by investigating the underlying population structure. Striking differences were found, with GBS uncovering four distinct Washingtonia populations and identifying a suite of loci associated with temperature, consistent with ecologically mediated divergence. By contrast, individual mountain ranges could be resolved in Brahea and few loci were associated with environmental variables, implying a more prominent role of neutral divergence. Finally, evidence was found for long-distance dispersal events in Washingtonia but not Brahea, in line with knowledge of the dispersal mechanisms of these palms including the possibility of human-mediated dispersal. Overall, our study demonstrates the power of GBS together with a comparative approach to elucidate markedly different patterns of genomewide divergence mediated by multiple effectors.

| S-EPMC6010798 | biostudies-literature

Contrasting wet deposition composition between three diverse islands and coastal North American sites.

Project description:This study examined spatial variations of precipitation accumulation and chemistry for six sites located on the West and East Coasts of the U.S., and one site each on the islands of Hawaii, Bermuda, and Luzon of the Philippines (specifically Manila). The nine coastal sites ranged widely in both mean annual precipitation accumulation, ranging from 40 cm (Mauna Loa, Hawaii) to 275 cm (Washington), and in terms of monthly profiles. The three island sites represented the extremes of differences in terms of chemical profiles, with Bermuda having the highest overall ion concentrations driven mainly by sea salt, Hawaii having the highest SO 4 2 - mass fractions due to the nearby influence of volcanic SO2 emissions and mid-tropospheric transport of anthropogenic pollution, and Manila exhibiting the highest concentration of non-marine ions ( NH 4 + non-sea salt [nss] SO 4 2 - , nss Ca2+, NO 3 - , nss K+, nss Na+, nss Mg2+) linked to anthropogenic, biomass burning, and crustal emissions. The Manila site exhibited the most variability in composition throughout the year due to shifting wind directions and having diverse regional and local pollutant sources. In contrast to the three island sites, the North American continental sites exhibited less variability in precipitation composition with sea salt being the most abundant constituent followed by some combination of SO 4 2 - , NO 3 - , and NH 4 + . The mean-annual pH values ranged from 4.88 (South Carolina) to 5.40 (central California) with NH 4 + exhibiting the highest neutralization factors for all sites except Bermuda where dust tracer species (nss Ca2+) exhibited enhanced values. The results of this study highlight the sensitivity of wet deposition chemistry to regional considerations, elevation, time of year, and atmospheric circulations.

| S-EPMC7660117 | biostudies-literature

North American Arabidopsis

Project description:Fine-scale Population Structure of North American Arabidopsis Reveals Multiple Sources of Introduction from Across Eurasia

| PRJEB42417 | ENA

North American Microtus

Project description:Sequencing vole sex chromosomes Raw sequence reads

| PRJNA415618 | ENA

North American Brain Expression Consortium: DNA Methylation

Project description:A fundamental challenge in the post-genome era is to understand and annotate the consequences of genetic variation, particularly within the context of human tissues. We describe a set of integrated experiments designed to investigate the effects of common genetic variability on DNA methylation and mRNA expression distinct human brain regions. We show that brain tissues may be readily distinguished based on methylation status or expression profile. We find an abundance of genetic cis regulation mRNA expression and show for the first time abundant quantitative trait loci for DNA CpG methylation. We observe that the largest magnitude effects occur across distinct brain regions. We believe these data, which we have made publicly available, will be useful in understanding the biological effects of genetic variation. Authorized Access data: Mapping of GEO sample accessions to dbGaP subject/sample IDs is available through dbGaP Authorized Access, see http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000249

2012-05-09 | GSE36194 | GEO

Estimate of OH trends over one decade in North American cities.

Project description:The hydroxyl radical (OH) is the most important oxidant on global and local scales in the troposphere. Urban OH controls the removal rate of primary pollutants and triggers the production of ozone. Interannual trends of OH in urban areas are not well documented or understood due to the short lifetime and high spatial heterogeneity of OH. We utilize machine learning with observational inputs emphasizing satellite remote sensing observations to predict surface OH in 49 North American cities from 2005 to 2014. We observe changes in the summertime OH over one decade, with wide variation among different cities. In 2014, compared to the summertime OH in 2005, 3 cities show a significant increase of OH, whereas, in 27 cities, OH decreases in 2014. The year-to-year variation of OH is mapped to the decline of the NO2 column. We conclude that these cities in this analysis are either in the NOx-limited regime or at the transition from a NOx suppressed regime to a NOx-limited regime. The result emphasizes that, in the future, controlling NOx emissions will be most effective in regulating the ozone pollution in these cities.

| S-EPMC9169711 | biostudies-literature

Assessing Evidence of Phosphorus Concentration Trends in North American Fresh Waters.

Project description:The U.S. EPA's National Aquatic Resource Surveys (NARS) documented evidence of widespread, unexplained total phosphorus (TP) concentration increases in lakes and streams across the United States during the 2000 - 2012 time period. To examine the robustness of evidence for this trend, we used additional monitoring datasets to calculate rates of TP change in thousands of individual waterbodies across the U.S. during the same time frame, and compared them against TP change rates calculated in the same manner for waterbodies that were resurveyed under NARS in different years. For the additional datasets, median rates of TP change were substantially lower than median rates calculated using NARS data. To further examine differences between NARS and non-NARS results in specific waterbodies, we assembled composite datasets for 52 predominantly northern lakes that by chance had been sampled under both NARS and other sampling programs during the same time frame. Using only NARS data, the median calculated TP change rate for this set of lakes was positive, and similar to that for the larger set of 401 resurveyed NARS lakes. However, when additional sample data were included, the median calculated TP change rate for these lakes was much lower. Results suggest that increasing TP concentrations in waterbodies may not have been as ubiquitous as suggested. They also illustrate a need to supplement randomized continental-scale monitoring with detailed, site-focused investigations.

| S-EPMC10031499 | biostudies-literature

Opposing global change drivers counterbalance trends in breeding North American monarch butterflies.

Project description:Many insects are in clear decline, with monarch butterflies (Danaus plexippus) drawing particular attention as a flagship species. It is well documented that, among migratory populations, numbers of overwintering monarchs have been falling across several decades, but trends among breeding monarchs are less clear. Here, we compile >135,000 monarch observations between 1993 and 2018 from the North American Butterfly Association's annual butterfly count to examine spatiotemporal patterns and potential drivers of adult monarch relative abundance trends across the entire breeding range in eastern and western North America. While the data revealed declines at some sites, particularly the US Northeast and parts of the Midwest, numbers in other areas, notably the US Southeast and Northwest, were unchanged or increasing, yielding a slightly positive overall trend across the species range. Negative impacts of agricultural glyphosate use appeared to be counterbalanced by positive effects of annual temperature, particularly in the US Midwest. Overall, our results suggest that population growth in summer is compensating for losses during the winter and that changing environmental variables have offsetting effects on mortality and/or reproduction. We suggest that density-dependent reproductive compensation when lower numbers arrive each spring is currently able to maintain relatively stable breeding monarch numbers. However, we caution against complacency since accelerating climate change may bring growing threats. In addition, increases of summer monarchs in some regions, especially in California and in the south, may reflect replacement of migratory with resident populations. Nonetheless, it is perhaps reassuring that ubiquitous downward trends in summer monarch abundance are not evident.

| S-EPMC9542617 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data