Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

North American Microtus

ABSTRACT: Sequencing vole sex chromosomes Raw sequence reads

PROVIDER: PRJNA415618 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6208710_1.fastq.gz	Fastqsanger.gz
	SRR6208710_2.fastq.gz	Fastqsanger.gz
	SRR6208711_1.fastq.gz	Fastqsanger.gz
	SRR6208711_2.fastq.gz	Fastqsanger.gz
	SRR6208712_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Canis strain:North American canids

Project description:Canis strain:North American canids Raw sequence reads

| PRJNA490084 | ENA

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Microtus ochrogaster

Project description:Transcriptome sequencing of Prairie vole

| PRJNA79609 | ENA

Gallus gallus breed:North American Araucana

Project description:Gallus gallus breed:North American Araucana Raw sequence reads

| PRJNA524911 | ENA

Aquarana catesbeiana breed:North American bullfrog

Project description:Aquarana catesbeiana breed:North American bullfrog Raw sequence reads

| PRJNA417510 | ENA

Ten North-American tree and shrub species

Project description:Genotyping-by-sequencing Raw sequence reads for ten tree and shrub species

| PRJNA422818 | ENA

Multi-tissue transcriptome profiling of North American derived Atlantic salmon

Project description:The availability of a reference genome assembly for Atlantic salmon, Salmo salar, SNP genotyping platforms and low cost sequencing is enhancing the understanding of both life history and production-related traits in this important commercial species. We collected and analysed transcriptomes from selected tissues of Atlantic salmon to inform future functional and comparative genomics studies. Messenger RNA (mRNA) was isolated from brain, pituitary, ovary and liver before Illumina sequencing produced a total of 640 million 150-bp paired-end reads. Following read mapping, feature counting and normalization, cluster analysis identified genes highly expressed in a tissue-specific manner. Functional profiling identified gene clusters describing the unique functions of each tissue. Moreover, highly-expressed transcription factors present in each tissue-specific gene cluster were identified. The data and analysis presented are relevant to the emerging Functional Annotation of All Salmonid Genomes (FAASG) initiative that is seeking to develop a detailed understanding of both salmonid evolution and the genomic elements that drive gene expression and regulation.

2018-08-22 | GSE114247 | GEO

Towards an understanding of the mechanism of hypoevolution of Schistosoma japonicum schistosomula from Microtus fortis

Project description:More than 40 species of mammal have been reported to be infected naturally with Schistosoma japonicum (Chinese mainland strain) in China. The reed vole, Microtus fortis, is the only known mammalian host in which the schistosomes are unable to mature and cause significant pathogenic changes. Gene expression profiling of the 10 day old schistosomula was performed. Microarray analysis was also used to identify differences in gene expression between Schistosoma japonicum schistosomula from BALB/c mice and from Microtus fortis. 10 day old schistosomula were isolated, total RNA obtained and Agilent one colour labeling used. A custom designed Agilent microarray was used to determine what differential gene expression occurs between parasites maintained in either a permissive (mouse) or non-permissive (vole) hosts.

2010-12-02 | E-GEOD-25728 | biostudies-arrayexpress

Genome wide identification of enhancer regions in the retrosplenial cortex of the prairie vole, Microtus ochrogaster.

Project description:We use ChIP-seq targeting histone 3 lysine 4 mono-methylation (H3K4me1) to identify putative enhancer sites genome-wide, in the retrosplenial cortex of adult prairie vole males.

2015-12-11 | GSE73670 | GEO

Microtus ochrogaster

Project description:Microtus ochrogaster Raw sequence reads

| PRJNA382962 | ENA