A 30-year update of the climbers and vascular epiphytes inventory of the Cerro Nielol Natural Monument (La Araucania, Chile): a database.
Ontology highlight
ABSTRACT:
SUBMITTER: Pincheira-Ulbrich J
PROVIDER: S-EPMC8458268 | biostudies-literature |
REPOSITORIES: biostudies-literature
Similar Datasets
Project description:Mycorrhizal interactions of orchids are influenced by several environmental conditions. Hence, knowledge of mycorrhizal fungi associated with orchids inhabiting different ecosystems is essential to designing recovery strategies for threatened species. This study analyzes the mycorrhizal associations of terrestrial orchids colonizing grassland and understory in native ecosystems of the region of La Araucanía in southern Chile. Mycorrhizal fungi were isolated from peloton-containing roots and identified based on the sequence of the ITS region. Their capacities for seed germination were also investigated. We detected Tulasnella spp. and Ceratobasidium spp. in the pelotons of the analyzed orchids. Additionally, we showed that some Ceratobasidium isolates effectively induce seed germination to differing degrees, unlike Tulasnella spp., which, in most cases, fail to achieve protocorm growth. This process may underline a critical step in the life cycle of Tulasnella-associated orchids, whereas the Ceratobasidium-associated orchids were less specific for fungi and were effectively germinated with mycorrhizal fungi isolated from adult roots.
| S-EPMC7465119 | biostudies-literature
Project description:BackgroundSpecies lists are fundamental for knowledge of species diversity in regions subject to intense anthropogenic pressure, especially in poorly-studied ecosystems. The dataset comes from an inventory conducted in 30 fragments of Myrtaceae swamp forest, located in an agroforestry matrix landscape of the coastal La Araucanía Region in Chile. The data collection was carried out using line transect sampling, which was traced through the core of each fragment orientated towards its longest axis. The dataset provides a record of 55 species (24 trees, 1 vine [as a host], 16 herbs and 15 shrubs) including accidental epiphytes (n = 7), hemiparasites (n = 4), host (n = 10) and additionally woody debris (n = 36). The most frequent trees in the landscape were Myrceugenia exsucca (n = 36 records) and Blepharocalyx cruckshanksii (n = 33 records), species that were also the most common hosts. Drimys winteri was a companion species, other trees and shrubs generally being rarely observed, as was the case of the introduced species (Prunus avium, Rubus constrictus and Ulex europaeus). Branches were the most common microhabitat for hemiparasites. Within this group, Lepidoceras chilense was the most frequent species. For accidental epiphytes, Drimys winteri, which commonly grows on the ground (soil), were the most common species found in the main trunk crotch. Some unusual observations were the climber Cissus striata as host of Tristerix corymbosus (hemiparasite) and Tristerix corymbosus as host of Lepidoceras chilense (hemiparasite).New informationThis study represents a landscape-scale sample of the swamp forest, which is distributed in a dispersed pattern over a large stretch of Chile. The data were collected from 30 forest patches (from 0.05 to 936 ha), located on the coast of the Araucanía. The database includes the presence of 55 species of vascular plants in 356 records. The main novelty of this contribution is the systematic classification of species under six traits, never before reported in the same database: (i) condition (coarse woody debris, fallen log, live, snag), (ii) habit (herb, shrub, tree), (iii) growth microhabitat (e.g. tree trunk, branch, main trunk crotch), (iv) growth form (accidental epiphyte, hemiparasite, terricolous, vegetative), (v) host species (as appropriate) and (vi) relative location of the species in the sampled patch and surrounding areas (core, border, matrix). Species not previously observed in these forests were: Gavilea spp., Hieracium spp., Lophosoria quadripinnata, Berberis actinacantha, Gaultheria phillyreifolia, Ovidia pillo-pillo, Amomyrtus meli and Caldcluvia paniculata. In addition, two introduced species are novelties for the catalogue of vascular plants of Chile (Cupressus macrocarpa and Prunus avium). Several of these ecosystem traits are indeed new reports for these types of forests (e.g. accidental epiphytes, fallen logs, species-host relationship); at the same time, more frequent data (i.e. species composition, habit) are found in different contributions, making the comprehensive process of analysis difficult. Accordingly, the database is made available in this manuscript.
| S-EPMC7940323 | biostudies-literature
Project description:Here, we announce the genome sequences of 408 strains of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) obtained from nasopharyngeal swabs in the Araucanía Region, Southern Chile. The genomes obtained are valuable to expand the availability of useful genomic data for future epidemiological studies of SARS-CoV-2 in Chile and worldwide.
| S-EPMC9022523 | biostudies-literature
Project description:BACKGROUND:Despite evidence on efficacious interventions, a great proportion of depressed adolescents do not receive evidence-based treatment and have no access to specialized mental health care. Remote collaborative depression care (RCDC) may help to reduce the gap between needs and specialized mental health services. OBJECTIVE:The objective of this study was to assess the feasibility, acceptability, and effectiveness of an RCDC intervention for adolescents with major depressive disorder (MDD) living in the Araucanía Region, Chile. METHODS:A cluster randomized, assessor-blind trial was carried out at 16 primary care centers in the Araucanía Region, Chile. Before randomization, all participating primary care teams were trained in clinical guidelines for the treatment of adolescent depression. Adolescents (N=143; 13-19 years) with MDD were recruited. The intervention group (RCDC, N=65) received a 3-month RCDC treatment that included continuous remote supervision by psychiatrists located in Santiago, Chile's capital city, through shared electronic health records (SEHR) and phone patient monitoring. The control group (enhanced usual care or EUC; N=78) received EUC by clinicians who were encouraged to follow clinical guidelines. Recruitment and response rates and the use of the SEHR system were registered; patient adherence and satisfaction with the treatment and clinician satisfaction with RCDC were assessed at 12-week follow-up; and depressive symptoms and health-related quality of life (HRQoL) were evaluated at baseline and 12-weeks follow-up. RESULTS:More than 60.3% (143/237) of the original estimated sample size was recruited, and a response rate of 90.9% (130/143) was achieved at 12-week follow-up. A mean (SD) of 3.5 (4.0) messages per patient were written on the SEHR system by primary care teams. A third of the patients showed an optimal adherence to psychopharmacological treatment, and adolescents in the RCDC intervention group were more satisfied with psychological assistance than those in EUC group. Primary care clinicians were satisfied with the RCDC intervention, valuing its usefulness. There were no significant differences in depressive symptoms or HRQoL between groups. Satisfaction with psychological care, in both groups, was related to a significant change in depressive symptomatology at 12-weeks follow-up (beta=-4.3, 95% CI -7.2 to -1.3). CONCLUSIONS:This is the first trial of its kind in Latin America that includes adolescents from vulnerable backgrounds, with an intervention that proved to be feasible and well accepted by both patients and primary care clinicians. Design and implementation issues may explain similar effectiveness across arms. The effectiveness of the intervention seems to be comparable with an already nationwide established treatment program that proved to be highly efficacious under controlled conditions. TRIAL REGISTRATION:ClinicalTrials.gov: NCT01860443; https://clinicaltrials.gov/ct2/show/NCT01860443 (Archived by WebCite at http://www.webcitation.org/6wafMKlTY).
| S-EPMC5812981 | biostudies-literature
Project description:The dataset shows the relationship and valuation of the coastal dunes of the Araucanía region in Chile. The valuation of the local population was surveyed using a questionnaire applied to 49 subjects belonging to Mapuche communities and local government. The data consists of eight tables that show a list of questions, the number of times per year that visit the dunes, cultural practices carried out in the dunes, valuation of ecosystem services provided by the coastal dunes, and knowledge about flora and fauna. Lastly, the original questionnaire and its responses in Spanish and English are included in supplemantary material. This dataset was generated within the framework of the manuscript "Ecosystem services and uses of dune systems of the coast of the Araucanía Region, Chile: a perception study" where 23 leaders of Mapuche communities and 26 representatives of the local government were interviewed. The dataset can be used to compare the valuation of ecosystems by local communities, especially when quantitative data are scarce or do not exist.
| S-EPMC7851771 | biostudies-literature
Project description:To date, phytoplasmas belonging to six ribosomal subgroups have been detected to infect grapevines in Chile in 36 percent of the sampled plants. A new survey on the presence of grapevine yellows was carried out from 2016 to 2020, and 330 grapevine plants from the most important wine regions of the country were sampled and analyzed by nested PCR/RFLP analyses. Phytoplasmas enclosed in subgroups 16SrIII-J and 16SrVII-A were identified with infection rates of 17% and 2%, respectively. The vineyards in which the phytoplasma-infected plants were detected were further inspected to identify alternative host plants and insects of potential epidemiological relevance. Five previously unreported plant species resulted positive for 16SrIII-J phytoplasma (Rosa spp., Brassica rapa, Erodium spp., Malva spp. and Rubus ulmifolius) and five insect species were fully or partially identified (Amplicephalus ornatus, A. pallidus, A. curtulus, Bergallia sp., Exitianus obscurinervis) as potential vectors of 16SrIII-J phytoplasmas. The 16SrVII-A phytoplasmas were not detected in non-grape plant species nor in insects. This work establishes updated guidelines for the study, management, and prevention of grapevine yellows in Chile, and in other grapevine growing regions of South America.
| S-EPMC7696034 | biostudies-literature
Project description:Argasid ticks include vectors of relapsing fevers caused by Borrelia spp. in humans, and they can transmit arboviruses and other bacterial pathogens. Knowledge about soft ticks (Ixodida: Argasidae) in Algeria is incomplete, and distribution data need to be updated. Here we report a series of entomologic investigations that we conducted in five different areas in Algeria between 2012 and 2015. Ticks were identified by entomologic keys and molecular tools (16S rRNA gene). Six distinct species belonging to two genera were identified, including Ornithodoros capensis s.s., Ornithodoros rupestris, Ornithodoros occidentalis, Ornithodoros erraticus, Ornithodoros sonrai and Argas persicus. The present study highlights the distribution of soft ticks, the establishment of an update inventory with nine species and associated pathogens detected in argasid ticks in Algeria.
| S-EPMC5913355 | biostudies-literature
Project description:Parque Nacional La Campana (PNLC) is recognized worldwide for its flora and fauna, rather than for its microbial richness. Our goal was to characterize the structure and composition of microbial communities (bacteria, archaea and fungi) and their relationship with the plant communities typical of PNLC, such as sclerophyllous forest, xerophytic shrubland, hygrophilous forest and dry sclerophyllous forest, distributed along topoclimatic variables, namely, exposure, elevation and slope. The plant ecosystems, the physical and chemical properties of organic matter and the soil microbial composition were characterized by massive sequencing (iTag-16S rRNA, V4 and ITS1-5F) from the DNA extracted from the soil surface (5 cm, n = 16). A contribution of environmental variables, particularly related to each location, is observed. Proteobacteria (35.43%), Actinobacteria (32.86%), Acidobacteria (10.07%), Ascomycota (76.11%) and Basidiomycota (15.62%) were the dominant phyla. The beta diversity (~80% in its axes) indicates that bacteria and archaea are linked to their plant categories, where the xerophytic shrub stands out with the most particular microbial community. More specifically, Crenarchaeote, Humicola and Mortierella were dominant in the sclerophyllous forest; Chloroflexi, Cyanobacteria and Alternaria in the xerophytic shrubland; Solicoccozyma in the dry sclerophyllous forest; and Cladophialophora in the hygrophilous forest. In conclusion, the structure and composition of the microbial consortia is characteristic of PNLC's vegetation, related to its topoclimatic variables, which suggests a strong association within the soil microbiome.
| S-EPMC11356564 | biostudies-literature
Project description:Traditional diets reflect different cultures and geographical locations, and may provide healthy diet options. In Chile, it is unknown whether traditional culinary preparations are still remembered, let alone consumed. Therefore, we adapted methods to identify traditional culinary preparations for healthy and sustainable dietary interventions. In Chile's Metropolitan Region and the Region of La Araucanía, we collected data on the variety of traditional diets through cultural domain analyses: direct participant observation (n = 5); free listing in community workshops (n = 10); and pile sort activities within semi-structured individual interviews (n = 40). Each method was stratified by age (25-45 year, 46-65 year and ? 65 year) and ethnic group (first nations or not). About 600 preparations and single-ingredient foods were identified that differed both in frequency and variety by region. The foods most consumed and liked (n = 24-27) were ranked in terms of sustainability for public nutrition purposes. Methods originally designed to collect information about plants of indigenous peoples can be extended to collect data on the variety of existing traditional culinary preparations, globally. Context, both geographical and cultural, matters for understanding food variety, and its subsequent use in the design of healthy and sustainable diet interventions.
| S-EPMC7071181 | biostudies-literature
Project description:Background: Although the term "mental pain" is often the subject of expert opinions regarding claims for damages, there is still no standardized questionnaire in the German-speaking area to operationalize this concept. Therefore, the aim of this work is the development and validation of a self-assessment measurement for psychological pain after traumatic events (FESSTE). Methods: A first version of the questionnaire was applied on a sample of the German speaking general population (N = 425; 88% female). After performing an item analysis and exploratory factor analysis, the questionnaire was shortened and tested on a second German speaking general population sample (N = 619; 89% female). Finally, the newly developed questionnaire was related to the extent of traumatization (measured with a uniquely designed trauma checklist attached to the FESSTE) and already established instruments for the assessment of psychiatric symptom burden, which included the Brief Symptom Inventory-18 (BSI-18) and the Post-traumatic-Stress-Scale (PTSS-10). Results: The final version of the FESSTE consists of a total of 30 items and covers the subscales "Somatization," "Depression," "Intrusive Memories," "Dissociation" and "Anxiety," and a total scale "Mental Pain." Based on the confirmatory factor analysis, it is assumed that the latent factor structure of the FESSTE can be best described as a bifactor-model. The final version shows a satisfactory model fit, high internal consistencies, and strong positive correlations with the BSI-18 and PTSS-10, as well as the extent of traumatic experiences. Discussion: The FESSTE enables an operationalization of mental pain comprising five subscales and one total scale. What is more, the trauma checklist attached to the FESSTE allows for the standardized assessment of potentially traumatic experiences and the corresponding extent of these experiences. The results indicate that the FESSTE is a reliable and valid self-assessment procedure for mental pain, which is suitable for use in research and in expert practice.
| S-EPMC8115402 | biostudies-literature