Dataset Information

Soil fungal community structure and seasonal diversity following application of organic amendments of different quality under maize cropping in Zimbabwe.

ABSTRACT: Recent advocacy for Integrated Soil Fertility Management (ISFM) in smallholder farming systems in east and southern Africa show substantial evidence of increased and sustained crop yields associated with enhanced soil productivity. However, the impact ISFM on soil fungi has received limited attention, yet fungi play key roles in crop growth. Following total soil DNA extraction with ZR soil microbe miniprep kit, illumina sequencing was used to, examine the fungal communities (ITS1F) under a maize crop following co-application of organic nutrient resources including Crotalaria juncea, cattle manure and maize stover with inorganic fertilizers at three-time periods (T1-December, T2-January, and T3-February) in Zimbabwe. Ninety-five fungal species were identified that were assigned to Ascomycota (>90%), Basidiomycota (7%) and Zygomycota (1%). At T1, Ascomycota and Basidiomycota were identified across treatments, with Ascomycota attaining > 93% frequency. Fungal succession was noted and involved reduction of Ascomycota coupled by increase in Basidiomycota under the different treatments. For example at T3, Basidiomycota increased to 34% while Ascomycota declined to 66% under manure but remained unchanged in other two organics. Pre-season mineral nitrogen (N) associated with the 'Birch effect' apparently influenced the fungal community structure at T1 while readily available fertilizer N was critical at T2 and T3. The low-quality maize stover promoted the presence of Exophiala sp SST 2011 and this was linked to N immobilization. The impact of N addition was more pronounced under medium (manure) to low-quality (maize stover) resources. Fungi required phosphorus (P) and N for survival while their proliferation was dependent on substrate availability linked to resource quality. Interactive-forward test indicated that soil available P and N were most influential (P < 0.05) factors shaping fungal communities. Co-application of medium to high quality organic and inorganic resources show promise as a sustainable entry point towards enhancing belowground fungal diversity critical in driving nutrient supply.

SUBMITTER: Tauro TP

PROVIDER: S-EPMC8516296 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Similar Datasets

Project description:Soil erosion is a multifactor threat to crop production and the environment. Most studies on soil erosion characterization have not focused on soil nutrient loss associated with erosion. The aim of this study was therefore to quantify the magnitude of nutrient loss through soil erosion under different cropping systems and amendments to inform agronomic practices in sub-Saharan Africa (SSA). A field experiment was carried out on runoff plots with different cropping systems (sole maize, sole cowpea, sole maize and maize intercropped with soybean) as main plots and soil amendments (biochar, NPK (Nitrogen +Phosphorus +Potassium) fertilizer, NPK + biochar and a control (no amendment)) constituting the subplots in a randomized complete block design. For each block, a bare plot was included to assess the efficiency of the different crop and soil management practices on soil erosion. The study was carried out in three consecutive cropping seasons in the semi-deciduous forest zone of Ghana. The bare plots had the highest amounts of nitrogen (N), phosphorus (P), and potassium (K) eroded: 33.88, 12.35 and 12.75 kg ha-1 respectively followed by the control plots with magnitude of 20.43, 8.42 and 7.87 kg ha-1 respectively for N, P and K. Sole maize had the highest amounts of nutrient loss: 19.71, 8.12 and 7.27 for N, P and K respectively compared to all the other cropping systems where the losses varied respectively from 12.38 to 17.12, 6.67 to 7.49 and 5.81 to 6.75 kg ha-1 The legume-based cropping systems under inorganic fertilizer and biochar management effectively reduced nutrient loss more than all other treatment combinations. The off-site effect of soil erosion expressed as enrichment ratio (ER) was higher for all plots, which received inorganic fertilizer inputs varying from 1.93 to 3.06 while the other treatments had ERs of 1.51 to 2.03. The ERs of fine soil particles were greater than 1 (ranging from 1.14 to 3.6) being relatively higher than that of coarse particles (sand) with values below 1 (ranging from 0.62 to 0.88). The least cumulative monetary value of nutrient loss (30.82 US$ ha-1) was observed under cowpea cropping system which received NPK + BC treatment. Soil erosion affected directly soil nutrient depletion through nutrient loss; however, integrated soil fertility management associated with legume-based cropping systems can be alternative options to reducing its effects on croplands in SSA.

Project description:Soil types heavily influence ecological dynamics. It remains controversial to what extent soil types shape microbial responses to land management changes, largely due to lack of in-depth comparison across various soil types. Here, we collected samples from three major zonal soil types spanning from cold temperate to subtropical climate zones. We examined bacterial and fungal community structures, as well as microbial functional genes. Different soil types had distinct microbial biomass levels and community compositions. Five years of maize cropping (growing corn or maize) changed the bacterial community composition of the Ultisol soil type and the fungal composition of the Mollisol soil type but had little effect on the microbial composition of the Inceptisol soil type. Meanwhile, 5 years of fertilization resulted in soil acidification. Microbial compositions of the Mollisol and Ultisol, but not the Inceptisol, were changed and correlated (P < 0.05) with soil pH. These results demonstrated the critical role of soil type in determining microbial responses to land management changes. We also found that soil nitrification potentials correlated with the total abundance of nitrifiers and that soil heterotrophic respiration correlated with the total abundance of carbon degradation genes, suggesting that changes in microbial community structure had altered ecosystem processes. IMPORTANCE Microbial communities are essential drivers of soil functional processes such as nitrification and heterotrophic respiration. Although there is initial evidence revealing the importance of soil type in shaping microbial communities, there has been no in-depth, comprehensive survey to robustly establish it as a major determinant of microbial community composition, functional gene structure, or ecosystem functioning. We examined bacterial and fungal community structures using Illumina sequencing, microbial functional genes using GeoChip, microbial biomass using phospholipid fatty acid analysis, as well as functional processes of soil nitrification potential and CO2 efflux. We demonstrated the critical role of soil type in determining microbial responses to land use changes at the continental level. Our findings underscore the inherent difficulty in generalizing ecosystem responses across landscapes and suggest that assessments of community feedback must take soil types into consideration. Author Video: An author video summary of this article is available.

Dataset Information

Soil fungal community structure and seasonal diversity following application of organic amendments of different quality under maize cropping in Zimbabwe.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets