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Second-sphere effects on H₂O₂ activation by non-heme Fe^II complexes: role of a phenol group in the [H₂O₂]-dependent accumulation of Fe^IVO vs. Fe^IIIOOH.

ABSTRACT: Redox metalloenzymes achieve very selective oxidation reactions under mild conditions using O₂ or H₂O₂ as oxidants and release harmless side-products like water. Their oxidation selectivity is intrinsically linked to the control of the oxidizing species generated during the catalytic cycle. To do so, a second coordination sphere is used in order to create a pull effect during the activation of O₂ or H₂O₂, thus ensuring a heterolytic O-O bond cleavage. Herein, we report the synthesis and study of a new non-heme Fe^II complex bearing a pentaazadentate first coordination sphere and a pendant phenol group. Its reaction with H₂O₂ generates the classical Fe^IIIOOH species at high H₂O₂ loading. But at low H₂O₂ concentrations, an Fe^IVO species is generated instead. The formation of the latter is directly related to the presence of the 2nd sphere phenol group. Kinetic, variable temperature and labelling studies support the involvement of the attached phenol as a second coordination sphere moiety (weak acid) during H₂O₂ activation. Our results suggest a direct Fe^II → Fe^IVO conversion directed by the 2nd sphere phenol via the protonation of the distal O atom of the Fe^II/H₂O₂ adduct leading to a heterolytic O-O bond cleavage.

SUBMITTER: Rebilly JN

PROVIDER: S-EPMC8653992 | biostudies-literature | 2021 Dec

REPOSITORIES: biostudies-literature

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Publications

Second-sphere effects on H2O2 activation by non-heme FeII complexes: role of a phenol group in the [H2O2]-dependent accumulation of FeIVO vs. FeIIIOOH.

Rebilly Jean-Noël JN Herrero Christian C Sénéchal-David Katell K Guillot Régis R Inceoglu Tanya T Maisonneuve Hélène H Banse Frédéric F

Chemical science 20211117 47

Redox metalloenzymes achieve very selective oxidation reactions under mild conditions using O2 or H2O2 as oxidants and release harmless side-products like water. Their oxidation selectivity is intrinsically linked to the control of the oxidizing species generated during the catalytic cycle. To do so, a second coordination sphere is used in order to create a pull effect during the activation of O2 or H2O2, thus ensuring a heterolyt ...[more]

PMID: 35003600

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Project description:Fe(II)-dependent oxygenases employ hydrogen atom transfer (HAT) to produce a myriad of products. Understanding how such enzymes use dynamic processes beyond the immediate vicinity of the active site to control the selectivity and efficiency of HAT is important for metalloenzyme engineering; however, obtaining such knowledge by experiments is challenging. This study develops a computational framework for identifying second coordination sphere (SCS) and especially long-range (LR) residues relevant for catalysis through dynamic cross-correlation analysis (DCCA) using the human histone demethylase PHF8 (KDM7B) as a model oxygenase. Furthermore, the study explores the mechanistic pathways of influence of the SCS and LR residues on the HAT reaction. To demonstrate the plausibility of the approach, we investigated the effect of a PHF8 F279S clinical mutation associated with X-linked intellectual disability, which has been experimentally shown to ablate PHF8-catalyzed demethylation. In agreement, the molecular dynamics (MD) and quantum mechanics/molecular mechanics (QM/MM) studies showed a change in the H31-14K9me2 substrate orientation and an increased HAT barrier. We systematically analyzed the pathways by which the identified SCS and LR residues may influence HAT by exploring changes in H3K9me2 substrate orientation, interdomain correlated motions, HAT transition state stabilization, reaction energetics, electron transfer mechanism, and alterations in the intrinsic electric field of PHF8. Importantly, SCS and LR variations decrease key motions of α9-α12 of the JmjC domain toward the Fe(IV)-center that are associated with tighter binding of the H31-14K9me2 substrate. SCS and LR residues alter the intrinsic electric field of the enzyme along the reaction coordinate and change the individual energetic contributions of residues toward TS stabilization. The overall results suggest that DCCA can indeed identify non-active-site residues relevant for catalysis. The substitutions of such dynamically correlated residues might be used as a tool to tune HAT in non-heme Fe(II)- and 2OG-dependent enzymes.

Dataset Information

Second-sphere effects on H₂O₂ activation by non-heme Fe^II complexes: role of a phenol group in the [H₂O₂]-dependent accumulation of Fe^IVO vs. Fe^IIIOOH.

Publications

Second-sphere effects on H<sub>2</sub>O<sub>2</sub> activation by non-heme Fe<sup>II</sup> complexes: role of a phenol group in the [H<sub>2</sub>O<sub>2</sub>]-dependent accumulation of Fe<sup>IV</sup>O <i>vs.</i> Fe<sup>III</sup>OOH.

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