Mechanism of Diiron Hydrogenase Complexes Controlled by Nature of Bridging Dithiolate Ligand.
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ABSTRACT:
SUBMITTER: Natarajan M
PROVIDER: S-EPMC8734113 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:This investigation examines the protonation of diiron dithiolates, exploiting the new family of exceptionally electron-rich complexes Fe(2)(xdt)(CO)(2)(PMe(3))(4), where xdt is edt (ethanedithiolate, 1), pdt (propanedithiolate, 2), and adt (2-aza-1,3-propanedithiolate, 3), prepared by the photochemical substitution of the corresponding hexacarbonyls. Compounds 1-3 oxidize near -950 mV vs Fc(+/0). Crystallographic analyses confirm that 1 and 2 adopt C(2)-symmetric structures (Fe-Fe = 2.616 and 2.625 Å, respectively). Low-temperature protonation of 1 afforded exclusively [?-H1](+), establishing the non-intermediacy of the terminal hydride ([t-H1](+)). At higher temperatures, protonation afforded mainly [t-H1](+). The temperature dependence of the ratio [t-H1](+)/[?-H1](+) indicates that the barriers for the two protonation pathways differ by ?4 kcal/mol. Low-temperature (31)P{(1)H} NMR measurements indicate that the protonation of 2 proceeds by an intermediate, proposed to be the S-protonated dithiolate [Fe(2)(Hpdt)(CO)(2)(PMe(3))(4)](+) ([S-H2](+)). This intermediate converts to [t-H2](+) and [?-H2](+) by first-order and second-order processes, respectively. DFT calculations support transient protonation at sulfur and the proposal that the S-protonated species (e.g., [S-H2](+)) rearranges to the terminal hydride intramolecularly via a low-energy pathway. Protonation of 3 affords exclusively terminal hydrides, regardless of the acid or conditions, to give [t-H3](+), which isomerizes to [t-H3'](+), wherein all PMe(3) ligands are basal.
| S-EPMC3518320 | biostudies-literature
Project description:Reduction of carbon dioxide by a diiron(I) complex gives mu-carbonato-kappa(3)O:O',O''-bis{[2,2,6,6-tetramethyl-3,5-bis(2,4,6-triisopropylphenyl)heptane-2,5-diiminate(1-)-kappa(2)N,N']iron(II)} toluene disolvate, [Fe(2)(C(41)H(65)N)(2)(CO(3))].2C(7)H(8), a diiron(II) species with a bridging carbonate ligand. The asymmetric unit contains one diiron complex and two cocrystallized toluene solvent molecules that are distributed over three sites, one with atoms in general positions and two in crystallographic 1 sites. Both Fe(II) atoms are eta(2)-coordinated to diketiminate ligands, but eta(1)- and eta(2)-coordinated to the bridging carbonate ligand. Thus, one Fe(II) center is three-coordinate and the other is four-coordinate. The bridging carbonate ligand is nearly perpendicular to the iron-diketiminate plane of the four-coordinate Fe(II) center and parallel to the plane of the three-coordinate Fe(II) center.
| S-EPMC2675934 | biostudies-literature
Project description:The kinetically robust hydride [t-HFe2(Me2pdt)(CO)2(dppv)2]+ ([t-H1]+) (Me2pdt2- = Me2C(CH2S-)2; dppv = cis-1,2-C2H2(PPh2)2) and related derivatives were prepared with 57Fe enrichment for characterization by NMR, FT-IR, and NRVS. The experimental results were rationalized using DFT molecular modeling and spectral simulations. The spectroscopic analysis was aimed at supporting assignments of Fe-H vibrational spectra as they relate to recent measurements on [FeFe]-hydrogenase enzymes. The combination of bulky Me2pdt2- and dppv ligands stabilizes the terminal hydride with respect to its isomerization to the 5-16 kcal/mol more stable bridging hydride ([?-H1]+) with t1/2(313.3 K) = 19.3 min. In agreement with the nOe experiments, the calculations predict that one methyl group in [t-H1]+ interacts with the hydride with a computed CH···HFe distance of 1.7 Å. Although [t-H571]+ exhibits multiple NRVS features in the 720-800 cm-1 region containing the bending Fe-H modes, the deuterated [t-D571]+ sample exhibits a unique Fe-D/CO band at ?600 cm-1. In contrast, the NRVS spectra for [?-H571]+ exhibit weaker bands near 670-700 cm-1 produced by the Fe-H-Fe wagging modes coupled to Me2pdt2- and dppv motions.
| S-EPMC5821139 | biostudies-literature
Project description:The reaction of Fe2(pdt)(CO)6 with two equivalents of Ph2PC6H4NH2 (PNH2) affords the amido hydride HFe2(pdt)(CO)2(PNH2)(PNH) {[H1H]0, pdt2- = CH2(CH2S-)2}. Isolated intermediates in this conversion include Fe2(pdt)(CO)5-(?1-PNH2) and Fe2(pdt)(CO)4(?2-PNH2). X-ray crystallographic analysis of [H1H]0 shows that the chelating amino/amido-phosphine ligands occupy trans-dibasal positions. The 31P NMR spectrum indicates that [H1H]0 undergoes rapid proton exchange between the amido and amine centers. No exchange was observed for the hydride. Protonation of [H1H]0 gives [HFe2(pdt)(CO)2(PNH2)2]+ ([H21H]+), which contains two equivalent amino-phosphine ligands. Single-crystal X-ray crystallographic analysis of [H21H]+ also reveals hydrogen bonds between the exo amine protons with a THF molecule and BF4. Deprotonation of [H1H]0 with potassium tert-butoxide gave [HFe2(pdt)(CO)2(PNH)2]- ([1H]-), which was characterized spectroscopically. The complex has time-averaged C2 symmetry with two amido-phosphine ligands. FTIR spectroscopic measurements show that ?CO shifts by approximately 20 cm-1 in the series [1H]-, [H1H]0, and [H21H]+. These shifts are comparable to those seen for the S-protonation of the (NC)2(CO)Fe-(?-Scys)2Ni(Scys)2 site in the [NiFe]-hydrogenases.[1].
| S-EPMC5553979 | biostudies-literature
Project description:The synthesis and redox properties are presented for the electron-rich bis(monothiolate)s Fe2(SR)2(CO)2(dppv)2 for R = Me ([1]0), Ph ([2]0), CH2Ph ([3]0). Whereas related derivatives adopt C2-symmetric Fe2(CO)2P4 cores, [1]0-[3]0 have Cs symmetry resulting from the unsymmetrical steric properties of the axial vs equatorial R groups. Complexes [1]0-[3]0 undergo 1e- oxidation upon treatment with ferrocenium salts to give the mixed valence cations [Fe2(SR)2(CO)2(dppv)2]+. As established crystallographically, [3]+ adopts a rotated structure, characteristic of related mixed valence diiron complexes. Unlike [1]+ and [2]+ and many other [Fe2(SR)2L6]+ derivatives, [3]+ undergoes C-S bond homolysis, affording the diferrous sulfido-thiolate [Fe2(SCH2Ph)(S)(CO)2(dppv)2]+ ([4]+). According to X-ray crystallography, the first coordination spheres of [3]+ and [4]+ are similar, but the Fe-sulfido bonds are short in [4]+. The conversion of [3]+ to [4]+ follows first-order kinetics, with k = 2.3 × 10-6 s-1 (30 °C). When the conversion is conducted in THF, the organic products are toluene and dibenzyl. In the presence of TEMPO, the conversion of [3]+ to [4]+ is accelerated about 10×, the main organic product being TEMPO-CH2Ph. DFT calculations predict that the homolysis of a C-S bond is exergonic for [Fe2(SCH2Ph)2(CO)2(PR3)4]+ but endergonic for the neutral complex as well as less substituted cations. The unsaturated character of [4]+ is indicated by its double carbonylation to give [Fe2(SCH2Ph)(S)(CO)4(dppv)2]+ ([5]+), which adopts a bioctahedral structure.
| S-EPMC5927630 | biostudies-literature
Project description:Alkali metal cations can interact with Fe-N2 complexes, potentially enhancing back-bonding or influencing the geometry of the iron atom. These influences are relevant to large-scale N2 reduction by iron, such as in the FeMoco of nitrogenase and the alkali-promoted Haber-Bosch process. However, to our knowledge there have been no systematic studies of a large range of alkali metals regarding their influence on transition metal-dinitrogen complexes. In this work, we varied the alkali metal in [alkali cation]2[LFeNNFeL] complexes (L = bulky ?-diketiminate ligand) through the size range from Na(+) to K(+), Rb(+), and Cs(+). The FeNNFe cores have similar Fe-N and N-N distances and N-N stretching frequencies despite the drastic change in alkali metal cation size. The two diketiminates twist relative to one another, with larger dihedral angles accommodating the larger cations. In order to explain why the twisting has so little influence on the core, we performed density functional theory calculations on a simplified LFeNNFeL model, which show that the two metals surprisingly do not compete for back-bonding to the same ?* orbital of N2, even when the ligand planes are parallel. This diiron system can tolerate distortion of the ligand planes through compensating orbital energy changes, and thus, a range of ligand orientations can give very similar energies.
| S-EPMC4856002 | biostudies-literature
Project description:Understanding the catalytic process of the heterolytic splitting and formation of molecular hydrogen is one of the key topics for the development of a future hydrogen economy. With an interest in elucidating the enzymatic mechanism of the [Fe(2)(S(2)C(2)H(4)NH)(CN)(2)(CO)(2)(?-CO)] active center uniquely found in [FeFe]hydrogenases, we present a detailed spectroscopic and theoretical analysis of its inorganic model [Fe(2)(S(2)X)(CO)(3)(dppv)(PMe(3))](+) [dppv = cis-1,2-bis(diphenylphosphino)ethylene] in two forms with S(2)X = ethanedithiolate (1edt) and azadithiolate (1adt). These complexes represent models for the oxidized mixed-valent Fe(I)Fe(II) state analogous to the active oxidized "H(ox)" state of the native H-cluster. For both complexes, the (31)P hyperfine interactions were determined by pulse electron paramagnetic resonance and electron nuclear double resonance (ENDOR) methods. For 1edt, the (57)Fe parameters were measured by electron spin-echo envelope modulation and Mössbauer spectroscopy, while for 1adt, (14)N and selected (1)H couplings could be obtained by ENDOR and hyperfine sublevel correlation spectroscopy. The spin density was found to be predominantly localized on the Fe(dppv) site. This spin distribution is different from that of the H-cluster, where both the spin and charge densities are delocalized over the two Fe centers. This difference is attributed to the influence of the "native" cubane subcluster that is lacking in the inorganic models. The degree and character of the unpaired spin delocalization was found to vary from 1edt, with an abiological dithiolate, to 1adt, which features the authentic cofactor. For 1adt, we find two (14)N signals, which are indicative for two possible isomers of the azadithiolate, demonstrating its high flexibility. All interaction parameters were also evaluated through density functional theory calculations at various levels.
| S-EPMC3420818 | biostudies-literature
Project description:A series of mixed-valence nickel-iron dithiolates is described. Oxidation of (diphosphine)Ni(dithiolate)Fe(CO)(3) complexes 1, 2, and 3 with ferrocenium salts affords the corresponding tricarbonyl cations [(dppe)Ni(pdt)Fe(CO)(3)](+) ([1](+)), [(dppe)Ni(edt)Fe(CO)(3)](+) ([2](+)) and [(dcpe)Ni(pdt)Fe(CO)(3)](+) ([3](+)), respectively, where dppe = Ph(2)PCH(2)CH(2)PPh(2), dcpe = Cy(2)PCH(2)CH(2)PCy(2), (Cy = cyclohexyl), pdtH(2) = HSCH(2)CH(2)CH(2)SH, and edtH(2) = HSCH(2)CH(2)SH. The cation [2](+) proved unstable, but the propanedithiolates are robust. IR and EPR spectroscopic measurements indicate that these species exist as C(s)-symmetric species. Crystallographic characterization of [3]BF(4) shows that Ni is square planar. Interaction of [1]BF(4) with P-donor ligands (L) afforded a series of substituted derivatives of type [(dppe)Ni(pdt)Fe(CO)(2)L]BF(4) for L = P(OPh)(3) ([4a]BF(4)), P(p-C(6)H(4)Cl)(3) ([4b]BF(4)), PPh(2)(2-py) ([4c]BF(4)), PPh(2)(OEt) ([4d]BF(4)), PPh(3) ([4e]BF(4)), PPh(2)(o-C(6)H(4)OMe) ([4f]BF(4)), PPh(2)(o-C(6)H(4)OCH(2)OMe) ([4g]BF(4)), P(p-tol)(3) ([4h]BF(4)), P(p-C(6)H(4)OMe)(3) ([4i]BF(4)), and PMePh(2) ([4j]BF(4)). EPR analysis indicates that ethanedithiolate [2](+) exists as a single species at 110 K, whereas the propanedithiolate cations exist as a mixture of two conformers, which are proposed to be related through a flip of the chelate ring. Mössbauer spectra of 1 and oxidized S = 1/2 [4e]BF(4) are both consistent with a low-spin Fe(I) state. The hyperfine coupling tensor of [4e]BF(4) has a small isotropic component and significant anisotropy. DFT calculations using the BP86, B3LYP, and PBE0 exchange-correlation functionals agree with the structural and spectroscopic data, suggesting that the SOMOs in complexes of the present type are localized in an Fe(I)-centered d(z(2)) orbital. The DFT calculations allow an assignment of oxidation states of the metals and rationalization of the conformers detected by EPR spectroscopy. Treatment of [1](+) with CN(-) and compact basic phosphines results in complex reactions. With dppe, [1](+) undergoes quasi-disproportionation to give 1 and the diamagnetic complex [(dppe)Ni(pdt)Fe(CO)(2)(dppe)](2+) ([5](2+)), which features square-planar Ni linked to an octahedral Fe center.
| S-EPMC3288512 | biostudies-literature
Project description:The chemistry of metal hydrides is implicated in a range of catalytic processes at metal centers. Gaining insight into the formation of such sites by protonation and/or electronation is therefore of significant value in fully exploiting the potential of such systems. Here, we show that the muonium radical (Mu. ), used as a low isotopic mass analogue of hydrogen, can be exploited to probe the early stages of hydride formation at metal centers. Mu. undergoes the same chemical reactions as H. and can be directly observed due to its short lifetime (in the microseconds) and unique breakdown signature. By implanting Mu. into three models of the [FeFe]-hydrogenase active site we have been able to detect key muoniated intermediates of direct relevance to the hydride chemistry of these systems.
| S-EPMC5484327 | biostudies-literature
Project description:A series of asymmetrically carboxylate-bridged diiron(ii) complexes featuring fluorine atoms as NMR spectroscopic probes, [Fe2(PIM)(Ar(4F-Ph)CO2)2] (10), [Fe2(F2PIM)(Ar(Tol)CO2)2] (11), and [Fe2(F2PIM)(Ar(4F-Ph)CO2)2] (12), were prepared and characterized by X-ray crystallography, Mössbauer spectroscopy, and VT (19)F NMR spectroscopy. These complexes are part of a rare family of syn N-donor diiron(ii) compounds, [Fe2(X2PIM)(RCO2)2], that are structurally very similar to the active site of the hydroxylase enzyme component of reduced methane monooxygenase (MMOHred). Solution characterization of these complexes demonstrates that they undergo intramolecular carboxylate rearrangements, or carboxylate shifts, a dynamic feature relevant to the reactivity of the diiron centers in bacterial multicomponent monooxygenases.
| S-EPMC4618381 | biostudies-literature