Improving the Genome Annotation of Rhizoctonia solani Using Proteogenomics.

ABSTRACT:

Background

Rhizoctonia solani is a pathogenic fungus that causes serious diseases in many crops, including rice, wheat, and soybeans. In crop production, it is very important to understand the pathogenicity of this fungus, which is still elusive. It might be helpful to comprehensively understand its genomic information using different genome annotation strategies.

Methods

Aiming to improve the genome annotation of R. solani, we performed a proteogenomic study based on the existing data. Based on our study, a total of 1060 newly identified genes, 36 revised genes, 139 single amino acid variants (SAAVs), 8 alternative splicing genes, and diverse post-translational modifications (PTMs) events were identified in R. solani AG3. Further functional annotation o

SUBMITTER: Shu J 

PROVIDER: S-EPMC8844941 | biostudies-literature | 2021 Dec

REPOSITORIES: biostudies-literature