Proteomics

Dataset Information

0

Improving silkworm genome annotation using a proteogenomics approach

ABSTRACT: We collected a total of 9.8 million mass spectra generated in the laboratory from the proteomics analyses of different silkworm tissues, including the posterior silk gland (PSG) 30, middle silk gland 31, ovary and testis 32, head 33, brain, prothoracic glands, subesophageal ganglion 34, hemolymph 35, fat body 36 and embryo 37,38 of domestic silkworm, and the posterior silk gland of wild silkworm 39.

INSTRUMENT(S): LTQ Orbitrap

ORGANISM(S): Bombyx Mori (silk Moth)

TISSUE(S): Blood

SUBMITTER: Boxiong Zhong  

LAB HEAD: Boxiong Zhong

PROVIDER: PXD009697 | Pride | 2019-07-01

REPOSITORIES: Pride

Json Xml

Dataset's files

Source:
Action DRS
TheproteinsidentifiedintheproteomicsanalysisProteinFDR1.rar Other
ZB9-Drosophila.dat Other
ZB9-bombyx.dat Other
ZB9.dat Other
blood.thefifthdayof5thinstarlarva.raw.rar Raw
Items per page:
1 - 5 of 6
altmetric image

Publications

Improving Silkworm Genome Annotation Using a Proteogenomics Approach.

Ye Xiaogang X   Tang Xiaoli X   Wang Xiaoxiao X   Che Jiaqian J   Wu Meiyu M   Liang Jianshe J   Ye Lupeng L   Qian Qiujie Q   Li Jianying J   You Zhengying Z   Zhang Yuyu Y   Wang Shaohua S   Zhong Boxiong B  

Journal of proteome research 20190702 8

The silkworm genome has been deeply sequenced and assembled, but accurate genome annotation, which is important for modern biological research, remains far from complete. To improve silkworm genome annotation, we carried out a proteogenomics analysis using 9.8 million mass spectra collected from different tissues and developmental stages of the silkworm. The results confirmed the translational products of 4307 existing gene models and identified 1701 novel genome search-specific peptides (GSSPs)  ...[more]

Similar Datasets

Proteomics The proteomics analyses of different tissues(the posterior silk gland of wild silkworm)
2019-07-01 | PXD009671 | Pride
Proteomics Improving silkworm genome annotation using a proteogenomics approach
2019-07-01 | PXD009672 | Pride
Proteomics The proteomics analyses of different silkworm tissues(fat body)
2019-07-01 | PXD009695 | Pride
Proteomics The proteomics analyses of different silkworm tissues(brain, prothoracic glands, and subesophageal ganglion)
2019-07-01 | PXD009701 | Pride
Proteomics The proteomics analyses of different silkworm tissues(posterior silk gland)
2019-07-01 | PXD009869 | Pride
Proteomics iTRAQ-based proteomics analysis（posterior silk gland）
2019-07-01 | PXD010096 | Pride
Proteomics The proteomics analyses of different silkworm tissues(embryo and testis)
2019-07-01 | PXD009761 | Pride
Proteomics The proteomics analyses of different silkworm tissues (middle silk gland and ovary)
2019-07-01 | PXD009702 | Pride
Transcriptomics Identification of genes associated with the development of silk glands using transcriptomics in silkworm (Bombyx mori)
2023-08-02 | GSE239380 | GEO
Transcriptomics MicroRNAs of Bombyx mori identified by Solexa sequencing
2010-02-01 | E-GEOD-17965 | biostudies-arrayexpress