Unknown

Dataset Information

0

Comprehensive analysis of TCR repertoire of COVID-19 patients in different infected stage.


ABSTRACT:

Background

The current pandemic of coronavirus disease 2019 (COVID-19), transmitted person-to-person by the severe acute respiratory syndrome of coronavirus 2 (SARS-CoV-2), poses a threat to global public health.

Objective

In this study, we performed the comprehensive analysis of the T cell receptor (TCR) repertoire may contribute to a more in-depth understanding of the pathogenesis of COVID-19.

Methods

A comprehensive immunological analysis was performed to explore the features of the TCR repertoire and identified TCR sequences correlated with SARS-CoV-2 viral antigens.

Results

we analyzed the COVID-19 patients' TCR repertoires in peripheral blood mononuclear cells (PBMC) which obtained before (baseline), during (acute), and after rehabilitation (convalescent) by ImmunoSEQ-technology, and found that repertoire features of TCRβ-chain (TCRβ) complementary-determining region 3 (CDR3) in COVID-19 patients were remarkable difference, including decreased TCR diversity, abnormal CDR3 length, difference of TRBV/J gene usage and higher TCR sequence overlap. Besides, we identified some COVID-19 disease-associated TCRβ clones, and the abundance of them changed with the progression of the disease. Importantly, these disease-associated TCRβ clones could be used to distinguish COVID-19 patients from healthy controls with high accuracy.

Conclusions

We provide a clear understanding of the TCR repertoire of COVID-19 patients, which lays the foundation for better diagnosis and treatment of COVID-19 patients.

SUBMITTER: Wang G 

PROVIDER: S-EPMC9107015 | biostudies-literature | 2022 May

REPOSITORIES: biostudies-literature

altmetric image

Publications

Comprehensive analysis of TCR repertoire of COVID-19 patients in different infected stage.

Wang Guangyu G   Wang Yongsi Y   Jiang Shaofeng S   Fan Wentao W   Mo Chune C   Gong Weiwei W   Chen Hui H   He Dan D   Huang Jinqing J   Ou Minglin M   Hou Xianliang X  

Genes & genomics 20220514 7


<h4>Background</h4>The current pandemic of coronavirus disease 2019 (COVID-19), transmitted person-to-person by the severe acute respiratory syndrome of coronavirus 2 (SARS-CoV-2), poses a threat to global public health.<h4>Objective</h4>In this study, we performed the comprehensive analysis of the T cell receptor (TCR) repertoire may contribute to a more in-depth understanding of the pathogenesis of COVID-19.<h4>Methods</h4>A comprehensive immunological analysis was performed to explore the fea  ...[more]

Similar Datasets

| S-EPMC7833309 | biostudies-literature
| S-EPMC8482538 | biostudies-literature
| S-EPMC6344574 | biostudies-literature
2024-11-26 | GSE267639 | GEO
| S-EPMC7305739 | biostudies-literature
2024-11-26 | GSE267645 | GEO
| S-EPMC9882952 | biostudies-literature
2024-09-26 | E-MTAB-13593 | biostudies-arrayexpress
2024-11-26 | GSE267642 | GEO
2021-12-09 | GSE184330 | GEO