Browse
Submit Data
Databases
API
Help

Dataset Information

16 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete chloroplast genome sequence of Clerodendrum cyrtophyllum from Guangzhou, China.

ABSTRACT: Clerodendrum cyrtophyllum is a well-known medicinal plant in southern China. Here, we presented the complete chloroplast (cp) genome of C. cyrtophyllum using Illumina high-throughput sequencing technology. The C. cyrtophyllum cp genome size is 152,004 bp with 38.13% GC content, including a pair of inverted repeat regions (IR, 51,592 bp) separated by a large single copy (LSC, 86,480 bp) and a small single copy region (SSC, 18,425 bp). It possesses 87 protein-coding genes, 37 tRNA genes and eight rRNA genes. Phylogenetic analysis fully shows that C. cyrtophyllum is closely related to Clerodendrum bungei and Clerodendrum lindleyi. Overall, the complete cp genome sequence of C. cyrtophyllum provides a valuable resource for genetic diversity, phylogenetic relationship, and species identification.

SUBMITTER: Xu S

PROVIDER: S-EPMC9246035 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

The complete chloroplast genome sequence of Ficus formosana Maxim (Moraceae) from Guangzhou, China.

Project description:Ficus formosana Maxim is an economically valuable plant that is traditionally used in Chinese medicine. Here, we assembled the complete chloroplast (cp) genome of F. formosana using Illumina high-throughput sequencing technology. The cp genome size is 160,606 bp, with 35.90% GC content, including a large single copy region (LSC) of 88,668 bp, a small single copy region (SSC) of 20,140 bp and a pair of inverted repeat regions (IRs) of 25,899 bp. It encodes 86 protein-coding, 37 tRNA and 8 rRNA genes. Phylogenetic analysis fully resolved F. formosana on a branch with Ficus erecta within the genus Ficus. The complete cp genome sequence of F. formosana will provide valuable information for species identification and phylogenetic evolution.

| S-EPMC8189076 | biostudies-literature

Complete genome sequence of dengue virus serotype 3 from guangzhou, china.

Project description:In 2009, dengue virus serotype 3 (DENV-3) was first detected in Guangzhou, China. In this study, we identified another isolated strain belonging to genotype II. Phylogenetic analysis shows that the GZ/10476/2012 strain has a close relationship with the DENV-3 genotype II from Southeast Asian strains.

| S-EPMC3593333 | biostudies-literature

Complete genome sequence of dengue virus serotype 4 from guangzhou, china.

Project description:In 2010, the first complete genome sequence of a dengue virus serotype 4 genotype II strain was reported in Guangzhou, China. Here, we report another isolated strain belonging to the genotype II. Our results will offer help to dengue virus control and precautions.

| S-EPMC3668008 | biostudies-literature

Complete chloroplast genome sequence and phylogenetic analysis of Clerodendrum japonicum (Thunb.) Sweet (Ajugoideae, Lamiaceae).

Project description:Clerodendrum japonicum (Thunb.) Sweet belongs to the genus Clerodendrum in the family Lamiaceae. It is an important medicinal plant with great ornamental and economic value. We sequenced and analyzed the complete chloroplast genome of C. japonicum by Illumina sequencing in this study. The full length of the complete chloroplast genome is 152,215 bp, containing a pair of inverted repeat regions of 25,705 bp (IRa and IRb) separated by a large single-copy region (LSC) of 83,491 bp and a small single-copy region (SSC) of 17,314 bp. The C. japonicum chloroplast genome encodes 131 genes, comprising 85 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 1 pseudogene. This study will be useful for further study on population, phylogenetic, and molecular genetic studies of this medicinal plant.

| S-EPMC8259852 | biostudies-literature

Characterization of the complete chloroplast genome of Clerodendrum bungei Steud. (Lamiaceae).

Project description:Clerodendrum bungei Steud. is one kind of traditional medical herb which can be used for airway hyperreactivity treatment. In this study, the complete chloroplast genome sequence of C. bungei was assembled. Its complete circular chloroplast DNA length was 151,680 bp. The genome was made up of a large single-copy region of 83,189 bp, a small single-copy region of 17,311 bp, and a pair of inverted repeat regions of 25,590 bp. The genome totally encoded 130 genes, containing 85 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The phylogenetic analysis indicates that C. bungei belongs to the Lamiaceae family.

| S-EPMC8204993 | biostudies-literature

Complete chloroplast genome sequence of 'Field Muskmelon,' an invasive weed to China.

Project description:Cucumis melo L. var. agrestis Naud., commonly known as 'Field Muskmelon,' is an annual invasive weed in many parts of China. However, there is very little available information about the chloroplast genome of this species. Here, we first report and characterize its complete chloroplast genome sequence based on Illumina paired-end sequencing data. The complete plastid genome was 155,402 bp, which contained inverted repeats (IR) of 25,514 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 86,287 bp and 18,087 bp, respectively. The complete chloroplast genome contains 133 genes, comprising 87 protein-coding genes, 37 tRNA genes, 8 rRNA genes and 1 pseudogene. The overall GC content of the plastome is 36.9%. The phylogenetic analysis of 16 selected chloroplast genomes demonstrated that C. melo var. agrestis Naud was close to congeneric species C. xhytivus.

| S-EPMC8592621 | biostudies-literature

The complete chloroplast genome sequence of Sloanea leptocarpa (Elaeocarpaceae) from China.

Project description:Sloanea leptocarpa Diels, 1931 of the Elaeocarpaceae is an endemic plant from China distributed in subtropical evergreen broad-leaved forests and an excellent ornamental tree. The only available chloroplast genomic resource of the genus at present is that of S. sinensis (Hance) Hemsl., 1900 from eastern China. Here, we report the complete chloroplast genome sequence of S. leptocarpa which is less common than S. sinensis. The complete chloroplast genome of S. leptocarpa is 158,077 bp in length, and shows quadripartite organization including a pair of inverted repeat regions (IRs) (24,963 bp) that is divided by a large single-copy (LSC) region (88,519 bp) and a small single-copy (SSC) region (19,632 bp). The circular chloroplast genome of S. leptocarpa contains 119 unique genes, composed of 74 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis involving 52 species with complete chloroplast genomes supported that S. leptocarpa is closely related to S. sinensis. This finding is in agreement with previous studies in which Elaeocarpaceae belongs to Oxalidales instead of Malvales and provides additional evidence for the monophyly of the Sloanea, a sister clade of the Elaeocarpus.

| S-EPMC9176340 | biostudies-literature

The complete chloroplast genome of Clerodendrum japonicum (Thunb.) Sweet, a traditional Chinese medicinal plant.

Project description:Clerodendrum japonicum (Thunb.) sweet, a member of Verbenaceae, is a traditional Chinese medicinal plant mainly distributed in tropical and subtropical Asia. Herein, we reported the complete chloroplast genome sequence of C. japonicum. The size of the chloroplast genome is 152,171 bp in length, including a large single-copy region (LSC) of 83,415 bp, a small single-copy region (SSC) of 17,318 bp, which was separated by a pair of inverted repeated regions of 25,719 bp. The C. japonicum chloroplast genome encodes 133 genes, including 88 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The phylogenetic tree showed that C. japonicum is closely related to C. mandarinorum and C. yunnanense.

| S-EPMC7971232 | biostudies-literature

The complete chloroplast genome sequence of Ludisia discolor from Hainan of China.

Project description:Ludisia discolor is one of the most important ornamental and medicinal orchids. To improve our understanding of the evolution of chloroplast, we resequenced complete chloroplast (cp) genome of L. discolor from Hainan, China. The cp genome sequence of L. discolor of Hainan was 153,324?bp in length, with a large single-copy (LSC) region of 82,922?bp, a small single-copy (SSC) region of 17,258?bp, and a pair of inverted repeats (IR) regions of 26,572?bp. Complete chloroplast genome contain 132 genes, there were 86 protein-coding genes, 38 tRNA genes and eight rRNA genes. The phylogenetic tree showed that L. discolor of Hainan is sister to L. discolor (unknown distributed region). Their cp genomes have same gene number but different in length of genome, indicating high conserved among them.

| S-EPMC7707421 | biostudies-literature

The complete chloroplast genome sequence of Alniphyllum fortunei (Styracaceae) from Fujian, China.

Project description:Alniphyllum fortunei is a subtropical tree species, a large deciduous tree with a tall and straight trunk, which is an excellent fast-growing and broad-leaved tree species with a wide range of uses we resequenced complete chloroplast (cp) genome of A. fortunei from Fujian, China. The whole genome was 154,166 bp in length, consisting of a pair of inverted repeats (IR 26,658 bp), a large single-copy region (LSC 82,438 bp), and a small single-copy region (SSC 18,367 bp). The complete genome contained 139 genes, including 89 protein-coding genes, 40 tRNA, and 8 rRNA genes. The phylogenetic analyses based on the complete chloroplast genome sequence provided solid evidence that A. fortunei has a close relationship with A. pterospermum and Bruinsmia polysperma.

| S-EPMC7889130 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data