Dataset Information

Datasets of harmonized risk assessment of grapevine downy mildew and phenological observations in eight Italian regions (2012-2017).

ABSTRACT: Phytosanitary bulletins released at weekly interval by eight Italian regional plant protection services in the growing seasons 2012-2017 were used to derive an harmonized dataset of grapevine downy mildew infection risk and phenological observations. The downy mildew infection risk (n = 8816) was classified using a 5-point Likert response item ranging from 'very low' (1) to 'very high' (5) by six independent evaluators with domain expertise in agronomy, phytopathology and agrometeorology. Common criteria have been used in the risk assessment, considering (i) the presence of disease symptoms in field surveys, (ii) the host phenological susceptibility, (iii) the weather forecasts in the next week from the bulletin release date, (iv) the advice to apply a fungicide treatment and (v) the outputs of epidemiological models. The phenological observations are provided as BBCH codes (n = 1689), which have been either transcribed from the phytosanitary bulletins or derived from the narrative description of the visual observation. Phenological data refer to the main early and late grapevine varieties in the eight regions (NUTS-2 administrative unit). Each record is associated with the NUTS-2 and NUTS-3 (31 provinces) administrative unit of reference, to the growing season (2012-2017), and refers to the individual risk assessment by the six evaluators. The dataset is hosted by the Centre for Agriculture and Environment of the Italian Council for Agricultural Research and Economics. These data could be helpful to researchers who develop either grapevine phenological models or process-based epidemiological predictive algorithms in order to refine their calibration and evaluation, as well as being a valuable resource for stakeholders in charge of evaluating the effective implementation of Integrated Pest Management in the decision-making process of public plant protection services in Italy. The dataset is freely available here.

SUBMITTER: Bregaglio S

PROVIDER: S-EPMC9253452 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Project description:BackgroundTo limit the impact of the downy mildew disease of grapevine and reduce the need to recur to chemical treatments, an effective strategy might be recovering adaptive resistance traits in both cultivated and wild V. vinifera germplasm. Considering that stilbenes represent the most important class of phytoalexins in the Vitaceae, the constitutive expression and transcriptional activation of all the functional members of the stilbene synthase gene family were analysed in a group of nine grapevine genotypes following artificial infection with the oomycete Plasmopara viticola, the causal agent of the disease. In addition, in the same genotypes we analyzed the expression of genes encoding for two transcription factors involved in the transcriptional regulation of the stilbene synthase genes, namely VvMYB14 and VvMYB15, and of genes encoding for chalcone synthases.ResultsDowny mildew incidence and severity ranged from nihil to high in the grapevine genotypes considered, being low to moderate in a subgroup of V. vinifera genotypes. The constitutive expression of the stilbene synthase genes as well as the extent of their transcriptional activation following P. viticola inoculation appeared to be inversely related to the proneness to develop disease symptoms upon infection. In a specular manner, following P. viticola inoculation all the chalcone synthase genes were up-regulated in the susceptible grapevine genotypes and down-regulated in the resistant ones. The infection brought by P. viticola appeared to elicit a co-ordinated and sequential transcriptional activation of distinct stilbene synthase genes subsets, each of which may be regulated by a distinct and specific MYB transcription factor.ConclusionsThe present results suggest that the induction of stilbene biosynthesis may contribute to the basal immunity against the downy mildew of grapevine, thus representing an adaptive resistance trait to recover, in both cultivated and wild V. vinifera germplasm. During the early stages of P. viticola infection, an antagonistic interaction between flavonol and stilbene biosynthesis might occur, whose outcome might determine the subsequent extent of disease symptoms. Further studies are needed to decipher the possible regulatory mechanisms involved in the antagonistic crosstalk between these two metabolic pathways in resistant and susceptible genotypes in response to P. viticola.

Project description:Grapevine varieties showing partial resistance to downy mildew, caused by Plasmopara viticola, are a promising alternative to fungicides for disease control. Resistant varieties are obtained through breeding programs aimed at incorporating Rpv loci controlling the quantitative resistance into genotypes characterized by valuable agronomic and wine quality traits by mean of crossing. Traditional phenotyping methods used in these breeding programs are mostly based on the assessment of the resistance level after artificial inoculation of leaf discs in bioassays, by using the visual score proposed in the 2nd Edition of the International Organization of Vine and Wine (OIV) Descriptor List for Grape Varieties and Vitis species (2009). In this work, the OIV score was compared with an alternative approach, not used for the grapevine-downy mildew pathosystem so far, based on the measurement of components of resistance (RCs); 15 grapevine resistant varieties were used in comparison with the susceptible variety 'Merlot'. OIV scores were significantly correlated with P. viticola infection frequency (IFR), the latent period for the downy mildew (DM) lesions to appear (LP50), and the number of sporangia produced per lesion (SPOR), so that when the OIV score increased (i.e., the resistance level increases), IFR and SPOR decreased, while LP50 increased. The relationship was linear for LP50, monomolecular for IFR and hyperbolic for SPOR. No significant correlation was found between OIV score and DM lesion size, sporangia produced per unit area of lesion, length of infectious period, and infection efficiency of the sporangia produced on DM lesions. The correlation between OIV score and area under the disease progress curve (AUDPC) calculated by using the RCs and a simulation model was significant and fit an inverse exponential function. Based on the results of this study, the measurement of the RCs to P. viticola in grapevine varieties by means of monocyclic, leaf disc bioassays, as well as their incorporation into a model able to simulate their effect on the polycyclic development of DM epidemics in vineyards, represents an improved method for phenotyping resistance level.

Dataset Information

Datasets of harmonized risk assessment of grapevine downy mildew and phenological observations in eight Italian regions (2012-2017).

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