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Non-methylated islands in fish genomes are GC-poor.


ABSTRACT: In the vertebrate genomes studied to date the 5' end of many genes are associated with distinctive sequences known as CpG islands. CpG islands have three properties: they are non-methylated; the dinucleotide CpG occurs at the frequency predicted by base composition; and they are GC-rich. Unexpectedly we have found that CpG islands in certain fish only have the first two properties; that is, their GC-content is not elevated compared to bulk genomic DNA. Based on this finding, we speculate that the GC-richness of CpG islands in vertebrates other than fish is a passive consequence of a higher mutation rate in regions of open chromatin under conditions where the nucleotide precursor pools are biased.

SUBMITTER: Cross S 

PROVIDER: S-EPMC333903 | biostudies-other | 1991 Apr

REPOSITORIES: biostudies-other

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Non-methylated islands in fish genomes are GC-poor.

Cross S S   Kovarik P P   Schmidtke J J   Bird A A  

Nucleic acids research 19910401 7


In the vertebrate genomes studied to date the 5' end of many genes are associated with distinctive sequences known as CpG islands. CpG islands have three properties: they are non-methylated; the dinucleotide CpG occurs at the frequency predicted by base composition; and they are GC-rich. Unexpectedly we have found that CpG islands in certain fish only have the first two properties; that is, their GC-content is not elevated compared to bulk genomic DNA. Based on this finding, we speculate that th  ...[more]

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