Unknown

Dataset Information

0

The Saccharomyces Genome Database Variant Viewer.

ABSTRACT: The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org) is the authoritative community resource for the Saccharomyces cerevisiae reference genome sequence and its annotation. In recent years, we have moved toward increased representation of sequence variation and allelic differences within S. cerevisiae. The publication of numerous additional genomes has motivated the creation of new tools for their annotation and analysis. Here we present the Variant Viewer: a dynamic open-source web application for the visualization of genomic and proteomic differences. Multiple sequence alignments have been constructed across high quality genome sequences from 11 different S. cerevisiae strains and stored in the SGD. The alignments and summaries are encoded in JSON and used to create a two-tiered dynamic view of the budding yeast pan-genome, available at http://www.yeastgenome.org/variant-viewer.

SUBMITTER: Sheppard TK 

PROVIDER: S-EPMC4702884 | biostudies-other | 2016 Jan

REPOSITORIES: biostudies-other

Json Xml
altmetric image

Publications

The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org) is the authoritative community resource for the Saccharomyces cerevisiae reference genome sequence and its annotation. In recent years, we have moved toward increased representation of sequence variation and allelic differences within S. cerevisiae. The publication of numerous additional genomes has motivated the creation of new tools for their annotation and analysis. Here we present the Variant Viewer: a dynamic open-source we  ...[more]

Similar Datasets

Unknown Saccharomyces genome database informs human biology.
| S-EPMC5753351 | biostudies-literature
Unknown Saccharomyces genome database provides new regulation data.
| S-EPMC3965049 | biostudies-literature
Unknown Saccharomyces Genome Database: the genomics resource of budding yeast.
| S-EPMC3245034 | biostudies-literature
Unknown Integration of new alternative reference strain genome sequences into the Saccharomyces genome database.
| S-EPMC4888754 | biostudies-other
Unknown Transcriptome visualization and data availability at the Saccharomyces Genome Database.
| S-EPMC7061941 | biostudies-literature
Unknown Integration of macromolecular complex data into the Saccharomyces Genome Database.
| S-EPMC6360207 | biostudies-literature
Unknown New mutant phenotype data curation system in the Saccharomyces Genome Database.
| S-EPMC2790299 | biostudies-literature
Unknown Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure.
| S-EPMC148101 | biostudies-other
Unknown SCUD: Saccharomyces cerevisiae ubiquitination database.
| S-EPMC2567349 | biostudies-literature
Unknown New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources.
| S-EPMC9209811 | biostudies-literature