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Integration of new alternative reference strain genome sequences into the Saccharomyces genome database.

ABSTRACT: The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/) is the authoritative community resource for the Saccharomyces cerevisiae reference genome sequence and its annotation. To provide a wider scope of genetic and phenotypic variation in yeast, the genome sequences and their corresponding annotations from 11 alternative S. cerevisiae reference strains have been integrated into SGD. Genomic and protein sequence information for genes from these strains are now available on the Sequence and Protein tab of the corresponding Locus Summary pages. We illustrate how these genome sequences can be utilized to aid our understanding of strain-specific functional and phenotypic differences.Database URL: www.yeastgenome.org.

SUBMITTER: Song G 

PROVIDER: S-EPMC4888754 | biostudies-other | 2016

REPOSITORIES: biostudies-other

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Integration of new alternative reference strain genome sequences into the Saccharomyces genome database.

Song Giltae G   Balakrishnan Rama R   Binkley Gail G   Costanzo Maria C MC   Dalusag Kyla K   Demeter Janos J   Engel Stacia S   Hellerstedt Sage T ST   Karra Kalpana K   Hitz Benjamin C BC   Nash Robert S RS   Paskov Kelley K   Sheppard Travis T   Skrzypek Marek M   Weng Shuai S   Wong Edith E   Michael Cherry J J  

Database : the journal of biological databases and curation 20160601

The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/) is the authoritative community resource for the Saccharomyces cerevisiae reference genome sequence and its annotation. To provide a wider scope of genetic and phenotypic variation in yeast, the genome sequences and their corresponding annotations from 11 alternative S. cerevisiae reference strains have been integrated into SGD. Genomic and protein sequence information for genes from these strains are now available on the Sequen  ...[more]

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