Project description:Near Berlin, Germany, several juvenile red squirrels (Sciurus vulgaris) were found with moist, crusty skin lesions. Histology, electron microscopy, and cell culture isolation revealed an orthopoxvirus-like infection. Subsequent PCR and genome analysis identified a new poxvirus (Berlin squirrelpox virus) that could not be assigned to any known poxvirus genera.
Project description:In March 2020, the World Health Organization declared a pandemic due to the rapid and worldwide spread of the SARS-CoV-2 virus. To prevent spread of the infection social contact restrictions were enacted worldwide, which suggest a significant effect on the anthropogenic emission of gaseous and particulate pollutants in urban areas. To account for the influence of meteorological conditions on airborne pollutant concentrations, we used a Random Forest machine learning technique for predicting business as usual (BAU) pollutant concentrations of NO2 and PM10 at five observation sites in the city of Berlin, Germany, during the 2020 COVID-19 lockdown periods. The predictor variables were based on meteorological and traffic data from the period of 2017-2019. The differences between BAU and observed concentrations were used to quantify lockdown-related effects on average pollutant concentrations as well as spatial variation between individual observation sites. The comparison between predicted and observed concentrations documented good overall model performance for different evaluation periods, but better performance for NO2 (R2 = 0.72) than PM10 concentrations (R2 = 0.35). The average decrease of NO2 was 21.9% in the spring lockdown and 22.3% in the winter lockdown in 2020. PM10 concentrations showed a smaller decrease, with an average of 12.8% in the spring as well as the winter lockdown. The model results were found sensitive to depict local variation of pollutant reductions at the different sites that were mainly related to locally varying modifications in traffic intensity.
Project description:BackgroundTick-borne diseases are a major health risk for humans and dogs. In addition to collection and analysis of questing ticks, analysis of host-associated ticks for the presence of pathogens is a valuable method to gain insight into transmission patterns of tick-borne diseases.MethodsTicks were collected from dogs living in the Berlin/Brandenburg area. The three tick species Ixodes ricinus, Ixodes hexagonus and Dermacentor reticulatus were examined for the presence of Babesia spp., Borrelia spp., Rickettsia spp. and Anaplasmataceae. Conventional PCR followed by sequencing was used for pathogen detection and characterization.ResultsBabesia spp. were found in 2.5% and 3% of I. ricinus and I. hexagonus, respectively. Sequencing revealed the presence of Babesia microti, Babesia capreoli and Babesia venatorum. D. reticulatus were free of Babesia canis. Rickettsia spp. were detected in 61% of I. ricinus, 44% of I. hexagonus and 39% of D. reticulatus. Specifically detected were Rickettsia raoulti in D. reticulatus and I. hexagonus, Rickettsia helvetica in I. ricinus and I. hexagonus and Rickettsia monacensis in I. hexagonus. Anaplasma phagocytophilum and Candidatus Neoehrlichia mikurensis have been reported previously in I. ricinus (6.5% and 4.3%, respectively) and I. hexagonus (3.9% and 5.9%). Borrelia spp. were found in 11.6% of I. ricinus and 11.2% of I. hexagonus. Subsequent genospecies analysis revealed Borrelia afzelii, Borrelia garinii, Borrelia burgdorferi sensu stricto and Borrelia miyamotoi. Simultanous presence of more than one pathogen was found in 20% of I. ricinus and in 59% of I. hexagonus whereas the total frequency of any pathogen was 65% in I. ricinus, 59% in I. hexagonus and 64% in D. reticulatus. Ticks in which A. phagocytophilum was detected had a significantly increased risk of also containing Rickettsia. Ticks harbouring a pathogen had significantly higher scutal indices than ticks without presence of any pathogen.ConclusionsFrequencies of potential human or canine pathogens in ticks were considerable and DNA of all four groups of pathogens was detected. Differences in scutal indices might suggest that pathogens are frequently taken up by ticks when feeding on dogs in Berlin/Brandenburg.