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Mutational landscape of renal cell carcinoma with venous tumor thrombus

ABSTRACT: Renal cell carcinoma with venous tumor thrombus opens the unique opportunity to investigate the clonal evolution of a tumor in two fundamentally different compartments i.e., within the confinement of an organ and inside a large blood vessel. We performed multiregion whole exome sequencing of a total of 37 samples from five consecutive patients (normal tissue, n=5; primary tumors, n=16; tumor thrombi, n=16) to >35-fold target coverage. Four patients had a clear cell RCC, one patient had a poorly differentiated type II papillary RCC (RCC-VTT-04). The latter patient had a friable thrombus, the others were of solid consistency.

PROVIDER: EGAS00001001950 | EGA |

REPOSITORIES: EGA

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faa1d2f2-265c-462c-aff3-94cc4b356a90 - samples

Project description:We performed multiregion whole exome sequencing of a total of 37 samples from five consecutive patients (normal tissue, n=5; primary tumors, n=16; tumor thrombi, n=16) to >35-fold target coverage. Matching primary tumor and venous tumor thrombus samples were analyzed. Four patients had a clear cell RCC, one patient had a poorly differentiated type II papillary RCC (RCC-VTT-04). The latter patient had a friable thrombus, the others were of solid consistency.

| EGAD00001004887 | EGA

The gene expression profiling array of mRNAs and LncRNA between portal vein tumor thrombus tissues and paired tumor tissues in hapatocellular carcinoma

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Coagulation Factor XIII-Binding Aptamers as Bivalent Ligands Targeting Fibrin and Activated Platelets in the Thrombus

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RNA sequencing for cancer tissues and adjacent tissues of third-stage rectal cancer patients with and without blood vascular thrombus

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Proteomic analysis of ccRCC thrombus.

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The gene expression profiling array of mRNAs between portal vein tumor thrombus tissues and paired tumor tissues in hapatocellular carcinoma.

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2013-01-19 | E-GEOD-43630 | biostudies-arrayexpress

Single cell RNA sequencing of distal thrombus tissue from CTEPH patients

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2022-01-03 | PXD028411 | Pride

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