Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Adaptive laboratory evolution with furan aldehydes facilitates bioethanol fermentability for Zymomonas mobilis

ABSTRACT: Strain breeding is important for the efficient bioethanol fermentability. Here, it presented adaptive laboratory evolution with furan aldehydes contributed to the facilitated ethanol fermentability for Zymomomnas mobili. Genetic change was generated from adaptive laboratory evolution by genome resequencing assays. The key mutation would provide a robust strain biocatalyst for the production of biofuels and biochemicals.

INSTRUMENT(S): -

ORGANISM(S): Zymomonas Mobilis

SUBMITTER: Changzhou University

PROVIDER: PRJEB82671 | EVA | 2024-11-22

REPOSITORIES: EVA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ZM.raw.indel.accessioned.vcf.gz	Vcf
	ZM.raw.indel.accessioned.vcf.gz.csi	Vcf
	ZM.raw.indel.vcf.csi	Raw
	ZM.raw.indel.vcf.gz	Vcf
	ZM.raw.snp.accessioned.vcf.gz	Vcf

Items per page:

1 - 5 of 16

Similar Datasets

Adaptive laboratory evolution of E. coli ndh gene deletion strain

Project description:We have performed adaptive laboratory evolution of E. coli ndh gene deletion strain to examine the adaptive strategies of E. coli.

2023-09-12 | GSE242875 | GEO

Adaptive laboratory evolution of E. coli pdhR gene deletion strain

Project description:We have performed adaptive laboratory evolution of E. coli pdhR gene deletion strain to examine the adaptive strategies of E. coli.

2021-03-08 | GSE167389 | GEO

Generation of Escherichia coli Enhanced Acetate Utilization through Compensatory ATP Consumption via Adaptive Laboratory Evolution

Project description:We carried out adaptive laboratory evolution of an E. coli strain lacking four genes (adhE, pta, ldhA, frdA) involved in acetyl-CoA consumption, allowing the efficient utilization of acetate as its sole carbon and energy source. The transcriptomes according to the medium status (M9 aceate, M9 glucose) of the evolved strain (SBA01) and its parent strain (DSM01) were compared using RNA-seq.

2020-09-15 | GSE157942 | GEO

Expression data from laboratory evolution of Escherichia coli on lactate or glycerol

Project description:Laboratory adaptive evolution experiments were conducted using serial passage of E. coli in M9 minimal medium supplemented with either 2 g/L of lactate for 60 days or 2 g/L of glycerol for 44 days. 7 parallel evolution strains were generated for growth on lactate and 7 parallel evolution strains were generated for growth on glycerol. Affymetrix arrays were used to study the time-course change in gene expression from unevolved E. coli (day 0) to a midpoint evolved strain (day 20) and evolutionary endpoints

2011-10-22 | GSE33147 | GEO

Expression data from laboratory evolution of Escherichia coli on lactate or glycerol

2011-10-21 | E-GEOD-33147 | biostudies-arrayexpress

Adaptive laboratory evolution of chorismate synthase knockouts

Project description:We used RNA-seq to profile E. coli K-12 MG1655 strains subjected to adaptive laboratory evolution after chorismate synthase knockouts. Either isochorismate synthase (menF) or isochorismate synthase AND chorismate lyase (ubiC) was deleted from a strain of E. coli K-12 MG1655 that had already been previously adapted for growth on glucose minimal media. RNA-seq profiles of the original glucose-adapted strain, the 2 deletion strains, and 4 laboratory-evolved strains from each deletion are included in duplicate. ubiC catalyzes the first committed step of ubiquinone synthesis, an important molecule for the electron transport chain. Thus, these experiments allowed assessment of cellular adaptations to restore energy metabolism capability.

2023-02-08 | GSE224889 | GEO

genetic change of Aspergillus terreus with adaptive laboratory evolution in lignocellulose-derived model inhibitors

Project description:Strain breeding is important for the efficient itaconic acid fermentability. Here, it presented genetic variation of Aspergillus terreus with adaptive laboratory evolution in lignocellulose-derived model inhibitors. The key mutation would provide a robust strain biocatalyst for the production of biochemicals.

2024-11-17 | PRJEB82556 | EVA

Rewiring the metabolic network to increase docosahexaenoic acid productivity in Crypthecodinium cohnii by fermentation supernatant-based adaptive laboratory evolution

Project description:To overcome the inhibition caused by the fermentation supernatant in the late fermentation stage of docosahexaenoic acid (DHA)-producing Crypthecodinium cohnii, fermentation supernatant-based adaptive laboratory evolution (FS-ALE) was conducted. The cell growth and DHA productivity of the evolved strain (FS280) obtained after 280 adaptive cycles corresponding to 840 days of evolution were increased by 161.87% and 311.23%, respectively, at 72 h under stress conditions and increased by 19.87% and 51.79% without any stress compared with the starting strain, demonstrating the effectiveness of FS-ALE.

2021-11-27 | PXD030028 |

Adaptive laboratory evolution with heterologous pgi

Project description:Adaptive laboratory evolution with heterologous pgi

| PRJNA933234 | ENA

Adaptive laboratory evolution with heterologous pgi

Project description:We used RNA-seq to profile E. coli K-12 MG1655 strains subjected to adaptive laboratory evolution after knockout of endogenous glucose-6-phosphate isomerase (pgi) and subsequent expression of heterologous version of the pgi gene from Pseudomonas aeruginosa and Bacillus megaterium.

2023-02-09 | GSE224989 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data