Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA sequencing of Bos indicus testicular samples (adult and fetus) and liver samples (adult) [total RNA]

ABSTRACT: We report the raw data in fastq format of the sequencing of total and small RNA from testis and liver of Bos indicus cattle

ORGANISM(S): Bos indicus

PROVIDER: GSE106496 | GEO | 2020/11/03

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

RNA sequencing of Bos indicus testicular samples (adult and fetus) and liver samples (adult) [small RNA]

Project description:We report the raw data in fastq format of the sequencing of total and small RNA from testis and liver of Bos indicus cattle

2020-11-03 | GSE106497 | GEO

RNA sequencing of Bos indicus testicular samples (adult and fetus) and liver samples (adult)

Project description:This SuperSeries is composed of the SubSeries listed below.

2020-11-03 | GSE106498 | GEO

Epigenome screen suggests DNA methylation may affect beef tenderness through signal transduction in Bos indicus

Project description:Beef tenderness is a complex trait of economic importance for the beef industry. Understanding the genetic and epigenetic mechanisms underlying this trait may help improve the accuracy of breeding programs and deliver a better product quality to consumers. However, little is known about epigenetic effects in the muscle of Bos taurus and their implications in tenderness, and no studies have been conducted in Bos indicus. Therefore, we analyzed Reduced Representation Bisulfite Sequencing (RRBS) to search for differences in the methylation profile of Bos indicus skeletal muscle with extreme values for beef tenderness (tender = 6 animals, tough = 6 animals).

2022-05-27 | GSE190966 | GEO

RNA sequencing of Bos indicus testicular samples (adult and fetus) and liver samples (adult)

Project description:RNA sequencing of Bos indicus testicular samples (adult and fetus) and liver samples (adult)

| PRJNA417057 | ENA

Exploring molecular dynamics indicators associated with reproductive performance of Bos indicus cattle in plasma samples through data-independent acquisition mass spectrometry

Project description:Aim of the study was to profile the blood plasma proteome of healthy Bos indicus cattle and use it as a baseline against which to compare different conditions in Bos indicus cattle, such as disease, reproduction associated proteins and pregnancy specific proteins etc. Data-independent acquisition (DIA) bases quantitative proteomics approach coupled to LC-MS/MS methods were used to achieve this aim. An Orbitrap Fusion Tribrid mass spectrometer (Thermo Fischer Scientific, Bremen, Germany) connected to the Easy- nLC-1200 nanoflow liquid chromatography system (Thermo Scientific) was used for data acquisition.

2024-07-15 | PXD034103 | Pride

Bos indicus

Project description:Bos indicus

| PRJNA408207 | ENA

RNA sequencing of Bos indicus testicular samples (adult and fetus) and liver samples (adult) [small RNA]

Project description:RNA sequencing of Bos indicus testicular samples (adult and fetus) and liver samples (adult) [small RNA]

| PRJNA417061 | ENA

RNA sequencing of Bos indicus testicular samples (adult and fetus) and liver samples (adult) [total RNA]

Project description:RNA sequencing of Bos indicus testicular samples (adult and fetus) and liver samples (adult) [total RNA]

| PRJNA417062 | ENA

R. microplus expression profiles of larvae pre-attachment and feeding adult female stages in B. indicus and B. taurus

Project description:Comparative microarray analysis of Rhipicephalus (Boophilus) microplus expression profiles of larvae pre-attachment and feeding adult female stages on Bos indicus and B. taurus cattle Global analysis of gene expression changes in R. microplus during larval, pre-attachment and early adult stages of its life cycle feeding on Bos indicus and Bos taurus cattle were compared using gene expression microarray analysis. Among the 13 601 R. microplus transcripts from BmiGI Version 2 we identified 297 up and 17 down regulated transcripts were differentially expressed between R. microplus feeding on tick resistant cattle [Bos indicus (Brahman)] compared to R. microplus feeding on tick susceptible cattle [Bos taurus (Holstein-Friesian)]. These include genes encoding enzymes involved in primary metabolism, and genes related to stress, defence, cell wall modification, cellular signaling, receptor and cuticle. Microarrays were validated by qRT-PCR analysis of selected transcripts including the validation of three housekeeping genes. The analysis of all tick stages under survey suggested a coordinated regulation of defence proteins, proteases, and protease inhibitors to achieve successful attachment and survival of R. microplus on different host breeds particularly Bos indicus cattle.

2010-07-09 | GSE20605 | GEO

Bos indicus

Project description:Bos indicus Epigenomics

| PRJNA669405 | ENA