Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Expression data from kidney and liver

ABSTRACT: mRNA expression differences between the liver and kidney of an adult male (homo sapien) were investigated using three technical replicates. The purpose of the experiment was to compare array data generated using Affymetrix with measures of expression obtained using RNAseq (a sequencing approach for measuring expression that utilizes Solexa technology). Keywords: kidney, liver

ORGANISM(S): Homo sapiens

PROVIDER: GSE11045 | GEO | 2008/06/01

SECONDARY ACCESSION(S): PRJNA107027

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Expression data from kidney and liver of an adult human male

Project description:mRNA expression differences between the liver and kidney of an adult male (homo sapien) were investigated using three technical replicates. The purpose of the experiment was to compare array data generated using Affymetrix with measures of expression obtained using RNAseq (a sequencing approach for measuring expression that utilizes Solexa technology). Keywords: kidney, liver RNA samples from the liver and kidney were extracted within 6 hours post mortem. Aliquots of mRNA were extracted and hybridized to three Affymetrix U133 Plus 2.0 arrays (three technical replicates). The purpose of the study was to compare the Affymetrix array data with expression results obtained from RNAseq (Solexa). This dataset is part of the TransQST collection.

2008-06-01 | E-GEOD-11045 | biostudies-arrayexpress

Transcription profiling of rat liver and kidney mixtures on an Affymetrix platform to assess technical and biological variability

2008-08-12 | E-TABM-536 | biostudies-arrayexpress

Transcription profiling of rat liver and kidney mixtures on an Illumina platform to assess technical and biological variability

Project description:In this experiment, there are replicate measurements of gene expression in a group of similarly treated animals measured in such a way as to provide data for comparison of technical variation with biological variability. The data are twelve microarray measurements on each of six rats that were subject to the same control-group treatment. The twelve measurements encompass triplicate measures of RNA from the liver, from the kidney, and from two mixtures of both RNAs. IMPORTANT: 6C-1 and 1-6B1 are outlier because of poor cRNA yield. 4A-1 (low cRNA yield too) and 4D-1 seems to have been switched during processing. 2D1 and 5A3 were also mistake (samples picked from the wrong well in the original 96 plates) as they seems to cluster with B samples (75% liver-25% Kidney).

2008-09-18 | E-TABM-554 | biostudies-arrayexpress

Transcription profiling of rat to investigate technical and biological variability on the Agilent platform

2009-09-22 | E-TABM-555 | biostudies-arrayexpress

Transcription profiling of hypothalamus, liver, kidney, ovaries and testis from male and female humans and mice

Project description:Compared differentially express genes by sex in mouse for the following tissues: hypothalamus, liver, kidney, ovaries and testis (3 biological x 2 technical replicates for each tissues/sex). We used Affymetrix MOE430A Genechip arrays.

2007-03-21 | E-MEXP-114 | biostudies-arrayexpress

Transcription profiling of mouse hypothalamus, liver, kidney, ovary, and testes from male and female mice to assess sex specific differences in transcription

Project description:Sex Specific Transciption in Mouse Hypothalamus, Liver, Kidney, Ovary and Testis. For each somatic tissue there are 3 biological samples from different pools comprised of 10 animals for each sex each with a technical replicate. For each of the reproductive tissues there are 3 biological samples from different pools comprised of 10 animals with a technical replicate for each.

2007-09-29 | E-GEOD-1148 | biostudies-arrayexpress

Gene expression in donor kidney biopsies prior to kidney transplantation

Project description:Donor organ shortage, growing waiting lists and organ discard rates are key problems in kidney transplantation. Donor organ quality is a critical factor determining post-transplant graft outcomes. However, organ quality is difficult to predict. Balancing the use of marginal donors without affecting outcomes is a main issue in the transplant field. The decision of acceptance of a kidney organ for transplantation is mainly based on donor organ biopsy findings, even though there are recognized limitations. The lack of better measures of organ quality at the time of transplantation as a predictor of performance graft outcome is a serious clinical challenge. Herein, we propose the use of a limited set of genes that captures intrinsic biology of kidney donor organs to improve available scoring systems. We studied gene expression in 192 deceased donor kidney biopsies and evaluated short-term outcomes which included delayed graft function and eGFR (high versus low) at 24 months for 168 kidney transplant recipients.

2022-06-13 | GSE147451 | GEO

Proteome of heart, liver and kidney in thyrotoxicosis mice

Project description:Measurement of heart, liver and kidney proteome using TMT -MS

2023-02-15 | PXD040136 |

Human auxiliary liver and combined kidney transplantation

Project description:10 biopsies from one patient undergoing a auxiliary liver and combined kidney transplantation, where one liver lobe is replaced by an auxiliary liver lobe. Thereafter the kidney is transplanted. Keywords: Time course study

2011-03-02 | GSE8941 | GEO