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Analysis of gene expression in co-culture of PBMCs with colon cancer cell lines by High-Throughput Sequencing

ABSTRACT: (Objectives) The goal of this study is to investigate paracrine effect of peripheral blood mononuclear cells (PBMCs) on colon cancer cell lines. (Method) Transcription profiles of PBMCs (control) and PBMCs co-cultured with colon cancer cell lines (treatment) were generated by deep sequencing, in triplicate for SW480 and duplicate for HT29, using Illumina HiSeq 4000. (Results and conclusion) Transcriptome analysis of PBMCs has shown the gene expression changed when co-cultured with colon cancer cell lines. The result revealed significantly up- and down-regulated genes.

ORGANISM(S): Homo sapiens

PROVIDER: GSE110989 | GEO | 2020/12/31

REPOSITORIES: GEO

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Analysis of gene expression in co-culture of PBMCs with breast cancer cell lines by High-Throughput Sequencing

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Analysis of gene expression in co-culture of PBMCs with lung cancer cell lines by High-Throughput Sequencing

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Analysis of gene expression in co-culture of PBMCs with Hepatocellular carcinoma by High-Throughput Sequencing

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ERbeta modulation of NFkB pathway in colon cancer cell lines SW480 and HT29

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Analysis of gene expression in co-culture of PBMCs with ovarian cancer cell lines by High-Throughput Sequencing

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