Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Spen regulates X chromosome inactivation (CUT&RUN)

ABSTRACT: CUT&RUN on Spen-degron TX1072 mESCs was performed in 2 biological replicates. Cells were treated with doxycycline (1ug/mL) for 0h, 4h, 8h, 24h and 8h doxycycline and auxin (500uM).

ORGANISM(S): Mus musculus

PROVIDER: GSE131782 | GEO | 2019/12/08

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Spen regulates X chromosome inactivation (RNAseq in NPC)

Project description:RNAseq on Spen-degron TX1072 clones of neural progenitor cells (NPCs). RNAseq in 2 biological replicates at 3 different times of auxin treatment (0h aux, 24h aux, 48h aux).

2019-12-08 | GSE131783 | GEO

Spen regulates X chromosome inactivation (HiC in NPC)

Project description:HiC on Spen-degron TX1072 clones of neural progenitor cells (NPCs). HiC in 2 biological replicates before and after. 24h of auxin treatment.

2019-12-12 | GSE140388 | GEO

Transcriptomic analysis of the Arabidopsis leaf during the deetiolation

Project description:We report the mRNA profiles of the Arabidopsis thaliana seedlings germinated for 7days in the dark, then treated with light for 0h, 1h, 2h, 4h, 8h and 12h.

2022-10-05 | GSE189497 | GEO

RNA-SEQ analysis of bdf1-Y187F-Y354F mutant strain during yeast sporulation

Project description:The aim of this study is to compare NGS-derived yeast transcriptome profiling (RNA-seq) of wild-type and bdf1-Y187F-Y354F mutant strains after sporulation induction (time points: 0h 4h and 8h).

2017-01-01 | GSE89530 | GEO

Cell surface polysaccharides of Bifidobacterium induce functional regulatory T cells

Project description:To characterize the effect of CSGG in dendritic cell phenotypic changes, we performed gene expression RNAseq analysis for Mock and CSGG treated splenic dendritic cells after 0h, 4h and 8h of CSGG treatment.

2018-12-31 | GSE98947 | GEO

Midgut metamorphosis timecourse

Project description:A midgut reference sample is compared to midgut samples taken at various stages before (18h, 4h), at (0h), and after (2h, 3h, 4h, 5h, 6h, 8h, 10h, 12h) puparium formation. Keywords = Drosophila, ecdysone, network, genomic, microarray, organogenesis, EcR, midgut, central nervous system, salivary gland, epidermis, imaginal disc, development Keywords: other

2003-07-23 | GSE543 | GEO

Study of SPEN knockdown in MCF10A cells

Project description:In this experiment, we knocked down the expression of Split Ends (SPEN), a gene that we found was involved in the regulation of primary cilia formation, in MCF10A cells, to evaluate its effects on transcription. Split Ends (SPEN) is a transcriptional coregulator that have formerly identified as a tumour suppressor gene in ER-positive breast cancers. We expect the knockdown of SPEN in MCF10A cells to be accompanied with the down-regulation of genes involved in ciliogenesis as we observed that SPEN knockdown decreases primary cilia formation in those cells. We chose MCF10A cells because they harbour lots of primary cilia and therefore represent a good model to study the effect of SPEN on primary cilia formation.

2017-08-15 | E-MTAB-4974 | biostudies-arrayexpress

Spen regulates X chromosome inactivation (RNAseq in SPEN KO embryos)

Project description:RNAseq on Spen KO hybrid embryos.

2019-12-08 | GSE132557 | GEO

Study of SPEN overexpression in T47D cells. (2)

Project description:We investigated the functions/pathways affected by SPEN in breast cancer by global expression profiling in a cell model, where the human breast cancer cell line, T47D, were transfected with an expression vector coding for SPEN.

2015-10-21 | E-MTAB-2182 | biostudies-arrayexpress

Setd2 reprograns lipid metabolism for the resolution of inflammation

Project description:Purpose: The goal of this study is to identify dynamic expression profiles of epigenetic genes in BMDMs induced by LPS for a time-course stimulaiton. Methods: We profiled RNA-seq in bone marrow-derived macrophages stimulated with LPS for 0h, 4h, 8h, 12h, 24h. Results: Epigenetic genes showed distinct expression patterns under LPS stimulation in different times

2022-11-13 | GSE141473 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data