Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mouse ES cells' gene expression difference compared with that of the MEF cells

ABSTRACT: Mouse ES cells had different gene expression level compared with that of the MEF cells. This difference gave the mouse ES cells unique characteristics which could then be compared with other species' ES cells or iPS cells like human ES cells and Rat iPS cells by the homologue genes comparison to show which species' ES cells or iPS cells were more competitive with the other.

ORGANISM(S): Mus musculus

PROVIDER: GSE13358 | GEO | 2009/04/01

SECONDARY ACCESSION(S): PRJNA113963

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Human ES cells' gene expression difference compared with that of the adult cells including CCD-1079sk and IMR90

Project description:Human ES cells had different gene expression level compared with that of the adult cells including CCD-1079sk and IMR90. This difference gave the human ES cells unique characteristics which could then be compared with other species' ES cells or iPS cells like mouse ES cells and Rat iPS cells by the homologue genes comparison to show which species' ES cells or iPS cells were more competitive with the other.

2009-04-01 | GSE13357 | GEO

Rat iPS M13 cells' gene expression difference compared with that of the adult cells including rat BMC and PEF cells

Project description:Rat iPS M13 cells had different gene expression level compared with that of the adult cells including rat bone marrow cells(BMC) and rat primary ear fibroblasts(PEF). This difference gave rat iPS M13 cells unique characteristics which could then be compared with other species' ES cells or iPS cells like human ES cells and mouse ES cells by the homologue genes comparison to show which species' ES cells or iPS cells were more competitive with the other.

2009-04-01 | GSE13360 | GEO

Rat iPS F65 cells' gene expression difference compared with that of the adult cells including rat BMC and PEF cells

Project description:Rat iPS F65 cells had different gene expression level compared with that of the adult cells including rat bone marrow cells(BMC) and rat primary ear fibroblasts(PEF). This difference gave rat iPS F65 cells unique characteristics which could then be compared with other species' ES cells or iPS cells like human ES cells and mouse ES cells by the homologue genes comparison to show which species' ES cells or iPS cells were more competitive with the other.

2009-04-01 | GSE13359 | GEO

Mouse heart cells' gene expression difference compared with that of MEF cells

Project description:Mouse somatic heart cell had different gene expression level compared with that of the MEF cells. This difference gave the mouse somatic heart cell unique characteristics which could then be compared with the mouse ES cells by genes comparison to show the gene expression difference between mouse somatic heart cells and mouse ES cells.

2009-04-01 | GSE13574 | GEO

Mouse lung cells' gene expression difference compared with that of MEF cells

Project description:Mouse somatic lung cell had different gene expression level compared with that of the MEF cells. This difference gave the mouse somatic lung cell unique characteristics which could then be compared with the mouse ES cells by genes comparison to show the gene expression difference between mouse somatic lung cells and mouse ES cells.

2009-04-01 | GSE13575 | GEO

Genome-wide mapping of miRNAs expressed in embryonic stem cells and pluripotent stem cells generated by different reprogramming strategies

Project description:We report the miRNA profiling in MEF cells, ES cells and three Pluripotent Stem Cells obtained by three different reprogramming approaches from MEF cells based on Solexa sequencing. iPS cells are reprogrammed by four factors (OSKM) from MEF cells. NT-ESCs were established by reprogramming MEF cells into ESCs using nuclear transfer. NT-iPSCs were established to reflect the combination of nuclear transfer and iPS technologies. iPSCs, NT-ESCs, and NT-iPSCs were exactly derived from the same MEF cells. The results indicate NT-ESCs give expression to the unique miRNAs other than both ESCs and iPSCs while pluripotent cells acquire or retain the pluripotent specific miRNAs compared with MEF. Furthermore, the comparison of different reprogramming cells suggests that several miRNAs have key roles in distinctly developmental potential reprogrammine cells. Small RNA profiles of MEF, ES, iPS, NT-ES and NT-iPS cells were generated by Solexa sequencing. MEF and ES cells were performed in triplicate. iPS, NT-ES and NT-iPS cells were sequenced in duplicate.

2014-07-05 | E-GEOD-52950 | biostudies-arrayexpress

Comparison of the gene expression profiles between iPS-OSH, iPS-J, ESC and MEF.

Project description:iPS-OSH was the novel iPS cells generated from our lab, the microarray analysis was used for determining the gene expression profiles of iPS-OSH. iPS-J was provided from Dr. Yamanaka (Riken, APS0001). Microarray analysis was used to compare the difference of gene expression profiles in iPS-OSH, iPS-J, ESC and MEF.

2012-08-01 | GSE31822 | GEO

Methylome analysis of 18 wild-type and mutant mouse ES, NP and MEF cells

Project description:The analysis of the 18 methylomes comprise 3 biological replicates of TDG+/- ES cells, 3 biological replicates of TDG-/- ES cells, 3 biological replicates of TDG+/- NP cells, 3 biological replicates of TDG-/- NP cells, 3 biological replicates of TDG+/+ MEF cells and 3 biological replicates of TDG-/- MEF cells.

2011-02-24 | GSE27468 | GEO

Comparison of the gene expression profiles between iPS-OSH, iPS-J, ESC and MEF.

2012-07-31 | E-GEOD-31822 | biostudies-arrayexpress

Expression data from mouse ES and iPS cells

Project description:Induced pluripotent stem (iPS) cells were produced from reprogramming of somatic cells, and they are shown to possess pluripotent properties similar to embryonic stem (ES) cells. Here we used microarrays to detail the global expression pattern among the ES cells and iPS cells, as well as the original mouse embryo fibroblast (MEF), to identify important players involved in the reprogramming process.

2009-08-03 | GSE16925 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data