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Exon array analysis of two human cell lines (HEK293T Ramos B cell)

ABSTRACT: In order to compare previously generated transcriptome data by second generation sequencing (Sultan et al. Science 2008), we interrogated the human Affymetrix exon chips 1.0ST using the same source of material.

ORGANISM(S): Homo sapiens

PROVIDER: GSE13474 | GEO | 2008/12/09

SECONDARY ACCESSION(S): PRJNA110149

REPOSITORIES: GEO

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Exon array analysis of two human cell lines (HEK293T Ramos B cell)

Project description:In order to compare previously generated transcriptome data by second generation sequencing (Sultan et al. Science 2008), we interrogated the human Affymetrix exon chips 1.0ST using the same source of material. Two biological replicates from HEK293T and B cell lines were hybridized on the human Affymetrix exon chips 1.0ST

2010-05-15 | E-GEOD-13474 | biostudies-arrayexpress

Effect of S534A substitution in the p65 subunit of Nfkb on response to 1mg LPS

Project description:WT mice and Nfkb/p65 S534A were exposed to 1mg/kg LPS and their gene expression measured. Affymetrix Mouse 1.0ST chips were used to measure gene expression.

2017-04-05 | GSE67178 | GEO

Effect of S534A substitution in the p65 subunit of Nfkb on response to 1µg LPS

Project description:WT mice and Nfkb/p65 S534A were exposed to 1µg/kg LPS and their gene expression measured. Affymetrix Mouse 1.0ST chips were used to measure gene expression

2017-04-05 | GSE67072 | GEO

Hepatocyte-specific knockout of Pten and of Pten and Tgfbr2 in mice

Project description:Gene expression of hepatocyt-specific knockout of Pten and of Pten and Tgfbr2 in mice as a model for human cholangiocarcinoma was determined Affymetrix Mouse 1.0ST chips were used to measure gene expression

2016-02-26 | GSE66717 | GEO

Gene expression profile related to rice internode growth under two nitrogen management practices

Project description:In order to investigate the gene expression profile related to rice internode growth under different nitrogen management practices, Agilent two color microarray chips were used to profile the differentially expressed genes of rice first internode between two nitrogen management. A rice cultivars Yin-Jing-Ruan-Zhan was used as material. First basal internode of YJRZ was taken at 30 days after transplanting, and RNA was extracted for microarray assay. Materials from OPT were label by Cy5 and FFP by Cy3.

2017-08-25 | GSE103063 | GEO

Expression profiling feline peripheral blood monocytes identifies a transcriptional signature associated with type two diabetes mellitus

Project description:Peripheral blood monocytes were isolated from 3 control and 3 diabetic cats using positive selection and expression profiled using the Affymetrix Feline 1.0ST array.

2017-02-06 | GSE92586 | GEO

Cabergoline-treated lutein granulosa cells from polycystic ovarian syndrome (PCOS) patients exhibit higher transcriptomic response than cabergoline-treated controls

Project description:This study assessed the transcriptomic profiles of lutein granulosa cells (LGCs) from women with and without PCOS using Affymetrix microarray chips to provide novel information about the molecular changes that occur in these cells when they are treated with a D2-ag (Cb2) and to assess the signal transduction pathways regulated by this treatment. Transcriptomic analysis, using Affimetrix Human 1.0ST. GeneChip Microarray was functionally analyzed by Gene Set Enrichment Analysis (GSEA) and network modeling with system biology perspective.

2017-09-03 | GSE98595 | GEO

Human lung MPC

Project description:A comparison of gene expression between control versus IPF human lung MPC using human Affy 1.0st chips. This work was funded by grants to S.M. Majka from the NIH R01HL091105 and NIH R01HL11659701. Additional funding was also provided by PPG-5P01HL108800-04 (PI:J. Loyd). Experiments were performed using the University of Colorado Cancer Center Microarray core (NCI P30 CA 46934-14). The project was supported in part by the National Center for Research Resources, Grant UL1 RR024975-01, and is now at the National Center for Advancing Translational Sciences, Grant 2 UL1 TR000445-06.

2017-03-23 | GSE94060 | GEO

RNA degradomes reveal substrates and importance for dark and nitrogen stress responses of Arabidopsis XRN4

Project description:Application of Parallel Analysis of RNA Ends (PARE), an RNA degradome approach to identify substrates of Arabidopsis XRN4. The xrn4 mutants overaccumulate decay intermediates from multiple mRNA turnover pathways. This material is based on work supported by the National Science Foundation [under Grant Numbers MCB1021636 and MCB1817764 to P.J.G.]

2019-08-13 | GSE119706 | GEO

Microenvironment Cell Populations Affymetrix HuGene 1.0ST

Project description:Human tissues harbour a wide array of cellular populations, often including both immune and lymphoid cell populations, endothelial cells and fibroblasts. The goal of this study was to identify transcriptomic markers of these cell populations, in order to quantify their abundances using transcriptomic data. The present super-series is composed of a large number of transcriptomic profiles of these cell populations. These profiles were obtained from public repositories, normalized using the fRMA R package (which allows a consistent normalization of profiles across public series), and consistently annotated. This series corresponds to Affymetrix HuGene 1.0ST profiles. Sample's annotation is available as supplementary material.

2016-09-02 | GSE86357 | GEO

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