Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Examine RNA translation of fresh frozen tumor and spleen tissues from the 4T1 mouse model

ABSTRACT: We performed RNase footprinting and RNA-seq to examine the regulation of RNA translation of fresh frozen tumor and spleen tissues from the 4T1 mouse model

ORGANISM(S): Mus musculus

PROVIDER: GSE153411 | GEO | 2022/01/20

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Examine RNA translation of fresh frozen tumor and spleen tissues from the 4T1 mouse model

Project description:Examine RNA translation of fresh frozen tumor and spleen tissues from the 4T1 mouse model

| PRJNA642365 | ENA

Expression profile comparing tumor GR1+ educated 4T1 cells with spleen Gr1+ educated 4T1 cells

Project description:Expression profile comparing tumor GR1+ educated 4T1 cells with spleen Gr1+ educated 4T1 cells

2024-01-23 | GSE216078 | GEO

Fresh/Frozen Project

Project description:The Ocular Surface Microbiome: A Comparison of Fresh and Frozen Samples

| PRJEB60101 | ENA

Fresh/Frozen Project

Project description:The Ocular Surface Microbiome: A Comparison of Fresh and Frozen Samples

| PRJEB60099 | ENA

miRNA experiment of fresh frozen colonic biopsy samples

Project description:The aim of the present study was to perform an additional global miRNA microarray analysis of tubular and tubulovillous adenoma biopsy specimen completed with colorectal adenocarcinomas using fresh frozen tisse

2016-10-19 | GSE83924 | GEO

Whole genome bisulfite sequencing and Infinium Mouse Methylation BeadChip using fresh and fresh-frozen mouse epidermis (WGBS)

Project description:We compared the global DNA methylation levels of hairless mouse epidermis using the Infinium Mouse Methylation BeadChip from Illumina and whole genome bisulfite sequencing (WGBS). We also studied the effect of sample storage conditions by using fresh and fresh-frozen epidermis. The DNA methylation levels of xxx,xxx CpG sites covered by both the BeadChip and WGBS were compared. DNA methylation levels obtained with WGBS and the BeadChip were strongly correlated (Pearson correlation r = 0.984). We applied a threshold of 15 reads for the WGBS methylation analysis. Even at a threshold of 10 reads, we observed no substantial difference in DNA methylation levels compared with that obtained with the BeadChip. The DNA methylation levels from the fresh and the fresh-frozen samples were strongly correlated when analysed with both the BeadChip (r = 0.996) and WGBS (r = 0.994). We conclude that the two methods of analysis generally work equally well for studies of DNA methylation of mouse epidermis and find that fresh and fresh-frozen epidermis can generally be used equally well. The choice of method will depend on the specific study’s aims and the available resources in the laboratory.

2022-09-23 | GSE213747 | GEO

Regulation of RNA translation after TUFM knockout

Project description:We performed RNase footprinting and RNA-seq to examine the regulation of RNA translation after TUFM knockout in HeLa cells

2022-01-20 | GSE151987 | GEO

4T1 vs. MMP3-low 4T1

Project description:Molecular comparison between control 4T1 cells with MMP3-low 4T1 cells RNA extracted from biological triplicates of each of the above mentioned cell populations were subjected to microarray analysis

2015-04-22 | E-GEOD-68100 | biostudies-arrayexpress

Label-free LC-MS/MS of Ubiquitinated proteins derived from UPs-4T1/WT and UPs-4T1/EPB nanovaccine

Project description:In this project, 4T1 parental cells (4T1/WT) were exposed to increasing concentrations of epirubicin (EPB) to establish a novel multi-drug resistant CSC-like breast cancer cell line (4T1/EPB). The ubiquitinated proteins were enriched from 4T1/WT or 4T1/EPB derived cell lysate using a-Al2O3-Vx3 nanoparticles to produce the covalently linked product UPs nanovaccine. Label-free LC-MS/MS mass spectrometry was used to detect the type and amount of enriched proteins of UPs from the 4T1/WT cells and the 4T1/EPB cells.

2021-08-20 | PXD027822 | Pride

Low-input RNase footprinting to profile RNA translation

Project description:We treated HEK293T cells with different doses of RNase and sequence RNA fragements after the treatments. Furthermore, we developed a low-input RNase footprinting approach to quantify genome-wide RNA translation using 50,000 and 1,000 HEK293T and K562 cells. The ribosome profiling and RNA-seq data were used as the control.

2022-01-20 | GSE151986 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data