Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Intestinal cells infected with Vibrio cholerae

ABSTRACT: Each sample was infected with a different strain of V. Cholerae Keywords = Cholerae Keywords: parallel sample

ORGANISM(S): Homo sapiens

PROVIDER: GSE1549 | GEO | 2004/10/14

SECONDARY ACCESSION(S): PRJNA89947

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Intestinal cells infected with Vibrio cholerae

Project description:Each sample was infected with a different strain of V. Cholerae Keywords = Cholerae

2010-06-05 | E-GEOD-1549 | biostudies-arrayexpress

Expression data from D. melanogaster whole guts or intestinal progenitor cells isolated from flies mock infected or infected with wild type Vibrio cholerae (C6706) or type VI secretion system deficient Vibrio cholerae (C6706ΔvasK)

Project description:We used RNA-seq to determine transcriptional profiles of whole guts or IPCs isolated from guts infected with wild type or type VI secretion system deficient Vibrio cholerae. We found significant differences between guts and progenitor cells infected wild type or type VI secretion system deficient Vibrio cholerae.

2019-08-21 | GSE136069 | GEO

California Vibrio cholerae CGH

Project description:Environmental isolates of Vibrio cholerae from California coastal water compared to reference strain N16961. A genotyping experiment design type classifies an individual or group of individuals on the basis of alleles, haplotypes, SNP's. Keywords: genotyping_design; array CGH

2007-07-17 | GSE8499 | GEO

Vibrio cholerae stringent response

Project description:This study is an analysis of changes in gene expression during stringent response in Vibrio cholerae. V. cholerae cells in mid-log were treated with serine hydroxamate and gene expression was compared to untreated cells. Keywords: Stress response, stringent response

2006-12-28 | GSE6616 | GEO

Vibrio cholerae Expression Study

Project description:Question Addressed: What is the level of expression of genes in Vibrio cholerae recovered from various conditions. These conditions include samples recovered directly from patients (O139 from stool samples from ICDDR,B and N16961 from stool samples from a vaccine trial held in Cincinnati) as well as standard logarithmic and stationary phase grown bacteria. Labeling reactions were performed in duplicate for each stool derived and in quadruplicate for each in vitro grown strain. A common reference was used for each slide, it was composed of RNA from the exponentially growing 92A1552 V. cholerae strain

2013-05-23 | GSE38178 | GEO

The TfoX regulon of Vibrio cholerae

Project description:In this study, we determined the TfoX regulon of V. cholerae WT strain A1552 compared to a ΔhapR and ΔqstR strain using RNA-seq to better understand the protein's function.

2016-08-29 | GSE80217 | GEO

Vibrio cholerae Freezing Study

Project description:Question Addressed: Does gene expression in V. cholerae change when samples are frozen at -80 degrees? An in vitro grown culture of O1 Inaba ICDDR,B (strain DSM-V999 described in Nature. 2002 Jun 6;417(6889):642-5) that had been grown to exponential phase (OD600 + 0.2) was placed in a 15 ml conical and then placed in a -80 degree freezer. A portion of the starting culture was harvested prior to freezing to serve as the control/reference for downstream hybridizations. RNA was recovered from the non-frozen sample as well as by prepping material directly from frozen samples. Labeling reactions were performed in quadruplicate for each sample. A replicate experimental design type is where a series of replicates are performed to evaluate reproducibility or as a pilot study to determine the appropriate number of replicates for a subsequent experiments.

2013-05-23 | GSE38179 | GEO

Changes in gene expression due to CgtA-depletion in Vibrio cholerae.

Project description:A cgtA-depletion strain in V. cholerae was constructed and used to identify changes in gene expression that occur due to loss of the gene product. This information was then used to characterize the role of the gene, which was found to be involved in stress response. Keywords: Depletion strain, stress response

2006-12-28 | GSE6617 | GEO

The QstR regulon of Vibrio cholerae

Project description:In this study, we compared the QstR regulon to the TfoX regulon (and TfoY regulon) of V. cholerae in WT strain A1552 and its ΔhapRΔvpsA derivative using RNA-seq to better understand QstR's function.

2018-05-18 | GSE114592 | GEO

Wildtype C.elegans infected with vibrio cholerae

Project description:RNA-seq transcriptomic comparison of C.elegans, grown on a lawn of Escherichia coli OP50 vs on a lawn of vibrio cholerae

2023-10-12 | E-MTAB-13001 | biostudies-arrayexpress