Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Vein and Intervein Drought RNAseq

ABSTRACT: We report here the RNAseq data generated from a drought experiment using tomato leaves (Solanum lycopersicum), in which three timepoints and two treatments were collected. More specifically, RNAseq was generated from tomato plants prior to drought (T0), during a period of drought (T1) and after a period of recovery from drought (T2). At timepoints 1 and 2 (T1 & T2), a control set of plants that were continuously watered are also included. Furthermore, at each timepoint, each leaf was dissected into two parts, including the vein and intervein. The samples are therefore named as Tissue/Timepoint/Treatment, and include VT0W (vein, T0, watered), VT1W (vein, T1, watered), VT1D (vein, T1, drought), VT2D, VT2W and IVT0W (intervein, T0, Watered), IVT1D, IVT1W, IVT2D, IVT2W. Note that VT2D and IVT2D, while named "drought", were actually recovered from drought.

ORGANISM(S): Solanum lycopersicum

PROVIDER: GSE156402 | GEO | 2020/10/31

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcription profiling of peripheral blood mononuclear cells taken from rheumatoid arthritis patients before and after treatment with Ethanercept (Enbrel)

Project description:Rheumatoid Arthritis patients were with Ethanercept (Enbrel), blocking the TNF alpha signalcascade by receptor mimicri. Peripheral blood samples were taken at 3 timepoints, before the first and 2 next drug injections after 3 and 6 days (t0, t1 (72h), t2 (144h)). Peripheral blood mononuclear cells were isolated by standard Ficoll gradient centrifugation. Whole RNA samples were profiled on Affymetrix Human Genome U95A and Human Genome U133A arrays. Later time point were analysed against timepoint 0 and differential gene expression signatures were correlated to clinical data i.e. responsiveness. <br><br>This experiment was reloaded into ArrayExpress on 27th January 2010 to fix errors in the CEL and CHP file association with hybridizations.

2010-04-22 | E-MTAB-11 | biostudies-arrayexpress

Equine skeletal muscle: pre versus post-exercise

Project description:Unconditioned thoroughbred geldings were exercised to maximal heart rate or fatigue on an equine high-speed treadmill. Skeletal muscle biopsies were taken from the middle gluteal muscle before, immediately after and four hours after exercise.Â Three-condition experiment, Pre exercise (T0), Immediately post exercise (T1), 4 hours post exercise (T2). Hybridisations: T0 vs T1, T0 vs T2 Biological replicates: 8 Technical replication Dye swap

2010-06-21 | E-GEOD-16235 | biostudies-arrayexpress

Epigenome-wide analysis of healthy obese individuals during a one-year weightloss intervention

Project description:Genome wide DNA methylation profiling of healthy obese individuals during a one-year weight loss intervention. The Illumina Infinium 450k Human DNA methylation Beadchip was used to obtain DNA methylation profiles across approximately 485,000 CpGs. Adipose tissue biopsies were collected at three time points, baseline (T0), Fifth month (T1) and Twelfth month (T2).

2017-11-08 | GSE103768 | GEO

An In Vivo Screen Uncovers Repression of Lipoprotein Lipase by MiR-29a as a Mechanism for Lipid Flux Away From the Liver

Project description:We screened for miRNA-regulated genes in adult mouse hepatocytes by a novel AAV8-Ttr-Cre delivery system deleting a floxed Dicer1 and blocking the processing of mature miRNAs. We then used a microarray to analyze the genes at T0 (just before injection), T1 (2 weeks after injection), T2 (4 weeks after injection)

2015-01-01 | GSE52526 | GEO

Gene expression patterns in blood during human anaphylaxis, trauma, and sepsis

Project description:Gene expression was profiled in peripheral blood samples collected from patients during anaphylaxis, trauma, or sepsis, and from healthy controls. Patients were recruited from three Australian emergency departments (ED) between March 2011 and June 2013. Samples were collected at ED arrival (T0), 1 hour later (T1), and 3 hours post arrival (T2).

2021-09-12 | GSE69063 | GEO

Genomic responses in blood during acute human anaphylaxis

Project description:Gene expression was profiled in peripheral blood samples collected over three time points from patients during acute anaphylaxis and from healthy controls. Patients presented to the Emergency Department (ED) at Royal Perth Hospital with acute, moderately severe anaphylaxis. Samples were collected at ED arrival (T0), 1 hour later (T1), and 3 hours post arrival (T2).

2014-07-02 | GSE47655 | GEO

FBLN1 and FABP4 are drivers of resistance to fleece rot in Australian Merino sheep

Project description:Transcriptional profiling of Ovine skin samples comparing resistant (RES) to susceptible (SUS) animals following fleece rot induction. Two condition experiment, RES vs SUS biopsies, over 3 time points. 31 RES 31 SUS T0: Prior to commencment of treatment T1: 2-3 days post commencment T2: 11 days post commencment The first skin biopsies were taken on the first day (T0) prior to commencement of the five day regime of simulated rainfall. Subsequent skin biopsies were taken 2-3 days into the wetting regime (T1) and following a recovery period of 11 days from the time that the wetting regime had begun (T2).

2010-06-05 | E-GEOD-21022 | biostudies-arrayexpress

Introducing early Palliative care in Lymphoma

Project description:Primary outcome(s): To evaluate the effectiveness of early integration of Palliative care in adult patients with HG relapsed/refractory NHL and elderly with newly diagnosed HG NHL by measuring the change in the quality of life using the Functional Assessment of Cancer Therapy Lymphoma (FACT-Lym) scale and subscales at T1 and T2 when compared to T0. Timepoint: Baseline Day 10 Day 40

| 29031 | ecrin-mdr-crc

Liver Chromatin accessibility landscapes during onset of salmon maturation

Project description:We sequenced 12 ATAC-Seq lbraries from four biological replicates before (T1) and after the onset of maturation (T2, T3, T4) from liver. To characterise changes in chromatin state following long light initiation, we defined differentially accessible regions (DARs) where mapping counts differed significantly between T1 and other time points. This revealed a strong early remodelling in the chromatin state landscape, as most DARs were observed at T2 (n=1501) before decreasing in stepwise fashion at T3 (n=477) and T4. The majority of DARs (n=1036 or 57%) exhibit reduced accessibility at T2 compared with T1 and subsequently remained unchanged at later time points (Fig. 5a; Supplementary Figure S14). Similarly, regions that gained accessibility at T2 (n=696 or 38%) also remained unchanged at later timepoints. This left less than 10% of DARs (n=99) that displayed an oscillating pattern following the onset of the maturation. Together, this revealed the ATAC-seq signatures were predominantly stable chromatin state changes.

2020-08-28 | GSE156998 | GEO

Data in support of serum proteomics of Laparoscopic Gastric Plication

Project description:Laparoscopic Gastric Plication (LGP) is a relatively new bariatric surgery procedure unique by not removing any part of the stomach. To bring new insights into the underlying molecular mechanism, we here present the first hypothesis-free analysis of the impact of LGP on the inflammatory and metabolic state as reflected by the serum proteome. A label-free quantitative shotgun proteomics approach was used to compare the serum proteome of 16 obese individuals before surgery with the serum of same individuals 1 to 2 months (timepoint T1) and 4 to 5 months (timepoint T2) post-surgery.

2019-06-06 | PXD010528 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data