Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ICLIP of HeLa cells with anti-TFIP11 antibody

ABSTRACT: iCLIP of HeLa cells with anti-TFIP11 antibody to investigate RNA binding locations of TFIP11 as part of a larger study on the function of TFIP11.

ORGANISM(S): Homo sapiens

PROVIDER: GSE158589 | GEO | 2021/09/22

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

iCLIP of HeLa cells with anti-TFIP11 antibody

Project description:iCLIP of HeLa cells with anti-TFIP11 antibody

| PRJNA665725 | ENA

iCLIP of FLAG-PURA overexpression with anti-PURA12D11 antibody in HeLa cells

Project description:iCLIP of FLAG-PURA overexpression with anti-PURA12D11 antibody in HeLa cells

| PRJNA798374 | ENA

iCLIP of FLAG-PURA overexpression with anti-FLAG antibody in HeLa cells

Project description:iCLIP of FLAG-PURA overexpression with anti-FLAG antibody in HeLa cells

| PRJNA798375 | ENA

RNA-Seq of HeLa cells treated with siTFIP11

Project description:RNA-Seq of HeLa cells treated with siTFIP11 or control siRNA to investigate the effect of TFIP11 knockdown on mRNA as part of a larger study on the function of TFIP11.

2021-09-22 | GSE156388 | GEO

Small RNA-Seq of HeLa cells treated with siTFIP11

Project description:Small RNA-Seq of HeLa cells treated with siTFIP11 or control siRNA to investigate the effect of TFIP11 knockdown on small RNA (snRNA, snoRNA, etc.) as part of a larger study on the function of TFIP11.

2021-09-22 | GSE156389 | GEO

RNA-Seq of HeLa cells treated with siDHX15

Project description:RNA-Seq of HeLa cells treated with siDHX15 or control siRNA to investigate the effect of DHX15 knockdown on mRNA as part of a larger study on the function of TFIP11 and DHX15.

2021-09-22 | GSE171446 | GEO

iCLIP of eIF4A3 and PTB in HeLa cells

Project description:HeLa cells were cultured in DMEM, supplemented with 10% (v/v) FCS and penicillin/streptomycin under 5% CO2 at 37°C. For iCLIP, HeLa cells expressing eIF4A3-GFP or PTB-GFP were induced with doxycycline to adjust the level of recombinant protein to the level of the endogenous counterpart and irradiated with 150 mJ/cm2 UV light (254 nm). The iCLIP cDNA libraries for eIF4A3 and PTB were sequenced with 50 bp on an Illumina HiSeq instrument.

2015-08-11 | E-MTAB-2599 | biostudies-arrayexpress

iCLIP of FXR1-WT and FXR1-V361P in HeLa cells

Project description:In the associated paper FXR1 is shown to package exceptionally long mRNAs in the cytoplasm and organizes them into an mRNP network. We performed iCLIP of FXR-WT and its mutant FXR1-V361P in HeLa cells where we knocked down endogenous FXR1 and replaced it with either GFP-tagged WT or V361P-mutant FXR1. The GFP-tagged proteins were immunoprecipitated using an anti-GFP antibody.

2024-11-01 | E-MTAB-13545 | biostudies-arrayexpress

wdr33 iCLIP-seq in control and U1 AMO-treated HeLa cells

Project description:To understand the effect of U1 AMO treatment on wdr33 binding profile , we carried out CstF64 iCLIP-seq experiments in HeLa cells treated with either control or U1 AMO.

2023-02-27 | GSE193370 | GEO

CstF64 iCLIP-seq in control and U1 AMO-treated HeLa cells

Project description:To understand the effect of U1 AMO treatment on CstF64 binding profile , we carried out CstF64 iCLIP-seq experiments in HeLa cells treated with either control or U1 AMO.

2023-02-27 | GSE192893 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data