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Genome-wide maps of chromatin state in cultured male germline stem cells [scATAC-seq]

ABSTRACT: We report the application of single-cell ATAC-seq to reconstruct the epigenetic program and identify key transcription factors and cis-regulatory elements associated with the epithelial and mesenchymal heterogeneity and G9a inhibition in cultured male germline stem cells (GSCs). First, we identified epithelial-like and mesenchymal-like clusters in the sample. Pseudotime trajectory also indicated that GSCs could undergo EMT-like process with unique regulators in different stages. Lastly, we showed that G9a inhibition could suppress the EMT-like process in GSCs.

ORGANISM(S): Mus musculus

PROVIDER: GSE159414 | GEO | 2023/07/01

REPOSITORIES: GEO

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Gene expression and chromatin accessibility profiles of cultured male germline stem cells [RNA-seq and ATAC-seq]

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Regan2022 - Mechanosensitive EMT model with autocrine TGFbeta signaling

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