Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

PEN-seq for identifying novel non-coding RNAs and their expression in cultured cells

ABSTRACT: Small RNAs between 20-500nt were least explored. Here we used RNase H-based rRNA depletion and a serial of strategies to developed PEN-seq method for identifying novel non-coding RNAs in total RNAs.

ORGANISM(S): Homo sapiens

PROVIDER: GSE160887 | GEO | 2023/04/10

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

sub-PEN-seq for identifying novel non-coding RNAs and their expression in cultured cells II

Project description:Small RNAs between 20-500nt were least explored. Here we used RNase H-based rRNA depletion and a serial of strategies to developed sub-PEN-seq method for identifying novel non-coding RNAs in Subcellular RNAs.

2023-04-10 | GSE182843 | GEO

PEN-seq for identifying novel non-coding RNAs and their expression in cultured cells

Project description:PEN-seq for identifying novel non-coding RNAs and their expression in cultured cells

| PRJNA674782 | ENA

sub-PEN-seq for identifying novel non-coding RNAs and their expression in cultured cells II

Project description:sub-PEN-seq for identifying novel non-coding RNAs and their expression in cultured cells II

| PRJNA758046 | ENA

RIP-PEN-seq for 15.5K in HEK293T cells

Project description:Here, we developed a RNA ImmunoPrecipitation coupled with sequencing of Paired-Ends of NcRNAs (RIP-PEN-seq) method to identify the full-length sequences of ncRNAs bound by 15.5K protein and discover a novel class of backward K-turn RNAs.

2023-04-10 | GSE160970 | GEO

PEN-seq for identifying non-coding RNAs and their expression in 15.5K-knockdown HEK293T cells

Project description:PEN-seq for identifying non-coding RNAs and their expression in 15.5K-knockdown HEK293T cells

| PRJNA776288 | ENA

RIP-PEN-seq for 15.5K in Hepa1-6 cells

2023-04-10 | GSE182757 | GEO

RIP-PEN-SHAPE-MaP for 15.5K-interacted RNAs

Project description:RIP-PEN-SHAPE-MaP for 15.5K-interacted RNAs

| PRJNA909819 | ENA

RIP-PEN-SHAPE-MaP for 15.5K-interacted RNAs

Project description:RNA secondary structure is crucial for RNA mentalism, including transcription, splicing, translation, RNA-binding protein interaction as well as turnover. The kink-turn (K-turn) structure motif is is an RNA three-dimensional (3D) structure that exists in all three primary phylogenetic domains and plays vital roles in RNA metabolism. In order to investigate the K-turn secondary structure in vivo, we combined SHAPE-Map and our RIP-PEN-seq to profile the RNA structure of 15.5K-interacted RNAs.

2023-04-10 | GSE220470 | GEO

Mycoplasma sp. Pen4 strain:Pen-4T

Project description:Mycoplasma sp. Pen4 strain:Pen-4T Genome sequencing

| PRJNA659024 | ENA

PEN-seq for identifying non-coding RNAs and their expression in 15.5K-knockdown HEK293T cells

Project description:15.5K is a RNA binding protein involved in the Minor Spliceosome. Here, we used shRNAs to knock down 15.5K in HEK293T cells to analysis the function of 15.5K in ncRNA expression.

2023-04-10 | GSE186849 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data