RIP-PEN-SHAPE-MaP for 15.5K-interacted RNAs

ABSTRACT: RNA secondary structure is crucial for RNA mentalism, including transcription, splicing, translation, RNA-binding protein interaction as well as turnover. The kink-turn (K-turn) structure motif is is an RNA three-dimensional (3D) structure that exists in all three primary phylogenetic domains and plays vital roles in RNA metabolism. In order to investigate the K-turn secondary structure in vivo, we combined SHAPE-Map and our RIP-PEN-seq to profile the RNA structure of 15.5K-interacted RNAs.

ORGANISM(S): Homo sapiens

PROVIDER: GSE220470 | GEO | 2023/04/10

REPOSITORIES: GEO