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Single-cell sequencing of the PBMC of dialysis patients

ABSTRACT: By using 10X Genomics technology, single-cell RNA sequencing (scRNAseq) of the PBMCs from two dialysis patients with high and low risk of development of early acute rejection (EAR) post transplant to identify immune cell subpopulations and their transcriptomic signatures associated with the risk of EAR. Analysis of the transcriptomic profiles of a total number of 11,966 cells determined NK and T cell subsets association with the EAR risk, especially decreased CD56Dim and increased CD4 CTL populations in high risk patients.

ORGANISM(S): Homo sapiens

PROVIDER: GSE162470 | GEO | 2024/11/22

REPOSITORIES: GEO

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Project description:Bacterial infections and the concurrent inflammation have been associated with increased long-term cardiovascular (CV) risk. In patients receiving peritoneal dialysis (PD), bacterial peritonitis is a common occurrence, and each episode further increases late CV mortality risk. However, the underlying mechanism(s) remains to be elucidated before safe and efficient anti-inflammatory interventions can be developed. Damage-Associated Molecular Patterns (DAMPs) have been shown to contribute to the acute inflammatory response to infections, but a potential role for DAMPs in mediating long-term vascular inflammation and CV risk following infection resolution in PD, has not been investigated. We found that bacterial peritonitis in mice that resolved within 24h led to CV disease-promoting systemic and vascular immune-mediated inflammatory responses that were maintained up to 28 days. These included higher blood proportions of inflammatory leukocytes displaying increased adhesion molecule expression, higher plasma cytokines levels, and increased aortic inflammatory and atherosclerosis-associated gene expression. These effects were also observed in infected nephropathic mice and amplified in mice routinely exposed to PD fluids. A peritonitis episode resulted in elevated plasma levels of the DAMP Calprotectin, both in PD patients and mice, here the increase was maintained up to 28 days. In vitro, the ability of culture supernatants from infected cells to promote key inflammatory and atherosclerosis-associated cellular responses, such as monocyte chemotaxis, and foam cell formation, was Calprotectin-dependent. In vivo, Calprotectin blockade robustly inhibited the short and long-term peripheral and vascular consequences of peritonitis, thereby demonstrating that targeting of the DAMP Calprotectin is a promising therapeutic strategy to reduce the long-lasting vascular inflammatory aftermath of an infection, notably PD-associated peritonitis, ultimately lowering CV risk.

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Single-cell sequencing of the PBMC of dialysis patients

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