Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Single-cell Transcriptome Profiling of SW480 tumors from zebrafish xenografts

ABSTRACT: Single-cell transcriptome profiling of SW480 tumors dissected from zebrafish xenografts at 1dpi and 4dpi.

ORGANISM(S): Homo sapiens

PROVIDER: GSE163750 | GEO | 2021/01/14

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Bulk Transcriptome Profiling of SW480 and SW620 tumors from zebrafish xenografts

Project description:Buk transcriptome profiling of SW480 and SW620 tumors dissected from zebrafish xenografts at 2dpi.

2021-01-14 | GSE163746 | GEO

Single-cell Transcriptome Profiling of SW480 tumors from zebrafish xenografts

Project description:Single-cell Transcriptome Profiling of SW480 tumors from zebrafish xenografts

| PRJNA687473 | ENA

Transcriptome Profiling of SW480 and SW620 tumors from zebrafish xenografts

Project description:Transcriptome Profiling of SW480 and SW620 tumors from zebrafish xenografts

| PRJNA687413 | ENA

Bulk Transcriptome Profiling of SW480 and SW620 tumors from zebrafish xenografts

Project description:Bulk Transcriptome Profiling of SW480 and SW620 tumors from zebrafish xenografts

| PRJNA687472 | ENA

Transcriptome Profiling of SW480 and SW620 tumors from zebrafish xenografts

Project description:This SuperSeries is composed of the SubSeries listed below.

2021-01-14 | GSE163751 | GEO

Treatment of SW480 colon cancer cell induced xenografts with AZD and DBZ

Project description:RNASeq data from replicates with and without treatment of SW480 colon cancer cells

2018-04-18 | GSE98922 | GEO

Transcriptome profiling of SW480 cells and cells derived from xenograft tumors from serial transplantation of SW480 cells by RNA-sequencing

Project description:SW480 is a colorectal cancer cell line. We have shown that cancer cells are characteristic of neural stem cells and neural stemness contributes to cell tumorigenicity. We found that during serial transplantation of SW480 cells into nude mice via subcutaneous injection (in vivo passaging), the cells enhanced their neural stemness, tumorigenicity and pluripotent differentiation potential.

2022-06-30 | GSE192374 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of SW480 cells and HPSE-knockdown SW480 cells Transcriptomes

Project description:Heparanase (HPSE), the only known mammalian endoglycosidase responsible for heparan sulfate cleavage, is a multi-faceted protein affecting multiple malignant behaviors in cancer cells. The goals of this study are to compare the mRNA transcriptome differences between SW480 cells and HPSE-knockdown SW480 cells. Methods: mRNA profiles of SW480 cells and HPSE-knockdown SW480 cells were generated by deep sequencing, in triplicate, using Illumina.

2019-02-14 | GSE126504 | GEO

Ezrin knockdown in SW480

Project description:Analysis of SW480 cells following knockdown of Ezrin using RNAi. Ezrin is a protein that regulate the organization of cytoskeleton. Ezrin KD SW480 was used to study the role of ezrin in colon cancer. Keywords: ezrin, colon cancer, migration

2008-04-29 | GSE11279 | GEO

Human SW480 cells: Untreated vs H2O2 Treated

Project description:ChIP-on-chip tilling array comparing untreated human SW480 cells vs SW480 cells treated with 2mM H2O2 for 30min. Exposing cells to the reactive oxygen species, hydrogen peroxide, recruits DNA methyltransferase 1 (DNMT1) to damaged chromatin. DNMT1 becomes part of a complex(es) containing DNMT3B and members of Polycomb Repressive Complex 4. The goal was to determine the effect of hydrogen peroxide treatment on chromatin, including changes in histone modifications and binding patterns of chromatin-associated proteins. [Agilent-014706]: Two-condition: untreated SW480 cells (U) vs H2O2 treated SW480 cells (T). Five-mark: SIRT1, gamma-HA2X, DNMT1, DNMT3B, and EZH2. [Agilent-014707]: Two-condition: untreated SW480 cells (U) vs H2O2 treated SW480 cells (T). Five-mark: SIRT1, gamma-HA2X, DNMT1, DNMT3B, and EZH2. [Agilent-026595]: Two-condition: untreated SW480 cells (U) vs H2O2 treated SW480 cells (T). Five-mark: SIRT1, gamma-HA2X, DNMT1, DNMT3B, and H3. [Agilent-027811]: Two-condition: untreated SW480 cells (U) vs H2O2 treated SW480 cells (T). Four-mark: H3, 3MeK4H3, AcK16H4, and 3MeK27H3.

2011-12-01 | E-GEOD-32382 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data